Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2773 192 1e-43 seq2744 143 6e-29 seq4618 141 2e-28 SEQ58356 129 1e-24 SEQ37497 123 6e-23 >seq2773 Length=85211 Score = 192 bits (212), Expect = 1e-43 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||||||||||||||||||||||||||| ||||| || | || |||| ||||||||| Sbjct 67059 AACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCTTC 67000 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || ||||| || || ||||||||||| |||||||||||||| |||||||| ||||| || Sbjct 66999 CAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTG 66940 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| || || |||||||| || || ||| ||| ||||| | |||| ||||| Sbjct 66939 GATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGTCTT 66880 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | ||| || || || | ||||||| Sbjct 66879 TCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| |||||||||||||||||||| || | || |||| ||||||||| Sbjct 67286 ACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCC 67227 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||||||||| |||||||||||||| |||||||| || || || Sbjct 67226 AGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGG 67167 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| |||||||| ||||||||| ||| ||||| | |||| ||||| Sbjct 67166 ATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTG 67107 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| || || | |||||| Sbjct 67106 CCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 174 bits (192), Expect = 3e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||||||||||||||| |||||||||||||| ||||| || | || || | ||||| Sbjct 66606 CAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATC 66547 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| || ||||| || || || || || ||||| ||||| ||||| |||||||||||||| Sbjct 66546 TTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTC 66487 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| ||||| ||| ||||| || || || || || || ||||| | ||||| ||| Sbjct 66486 TTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGT 66427 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| | |||||| || || | ||||||| Sbjct 66426 CTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | ||| | |||||| ||||||||||| ||||| || | || |||| ||||||| Sbjct 67517 AATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCT 67458 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || || || || || || ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct 67457 TCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 67398 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| ||||| |||||||| || || ||| ||| ||||| | |||| ||| Sbjct 67397 TGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTC 67338 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| || | ||| || || || | |||||| Sbjct 67337 TTTCCAGTAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| || || || |||||||| |||||||| | || || | ||||||| Sbjct 66833 AATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCT 66774 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || || || || || || ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct 66773 TCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 66714 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| || || |||||||| || || ||| ||| ||||| | |||| ||| Sbjct 66713 TGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTC 66654 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||| ||||| || || | |||||| Sbjct 66653 TTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || | |||||| || || || |||||||| |||||||| | || || | ||||||| Sbjct 66377 AATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCT 66318 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || ||||| || |||||||||||||| || || || || ||||| || ||||||||||| Sbjct 66317 TCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCC 66258 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || || ||||| || ||||| || || || | ||| | || Sbjct 66257 TGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTT 66198 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || | || || || || | ||||||| Sbjct 66197 TTTCCAGTGAGTGTCTTCACAAATATCTGCATTT 66164 >seq2744 Length=156805 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| || | || || ||||| |||||||| || ||||| || | || || Sbjct 156791 TCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGT 156732 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||||||||| || |||||||| | || |||||||| || || || Sbjct 156731 ACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACC 156672 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||||| ||| || || ||||| ||||| ||| ||| || || || Sbjct 156671 CTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAG 156612 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || || || || | || ||||| || | ||||| Sbjct 156611 GGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 >seq4618 Length=10119 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||| || | || || ||||| |||||||| |||||||| || | || || | || Sbjct 645 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 586 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| |||||||| || || ||||| || | || |||||||| || || || ||||| Sbjct 585 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 526 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||||||||| ||| || || || |||||||| || || |||||||| || | Sbjct 525 GTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 466 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| || || ||||| | |||||| Sbjct 465 AGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| || | || || || || |||||||| |||||||| || | || || Sbjct 423 TCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGT 364 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| || || || ||||| || | || |||||||| || || || Sbjct 363 GCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACC 304 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||||||||| ||| || || ||||||||||| || || |||||||| Sbjct 303 CTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAG 244 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || ||||| || || ||||| | |||||| Sbjct 243 AGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 123 bits (136), Expect = 6e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| || | || || ||||| ||||| || |||||||| || | || || Sbjct 195 TCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGT 136 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || ||||||||||| || || Sbjct 135 GCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATACC 76 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| ||||| ||| || || ||||||||||| || || |||||||| Sbjct 75 CTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAG 16 Query 195099 GGT 195101 || Sbjct 15 AGT 13 >SEQ58356 Length=38410 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| ||||| || | || ||||| || ||||||||||| |||| | || | ||| Sbjct 35052 CTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCA 35111 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| ||||| ||||| || ||||| | ||||| || || || ||||| || ||||| Sbjct 35112 TCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTA 35171 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 |||||||||||| || || || ||||| || || || ||||| || ||||| | Sbjct 35172 TCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATG 35231 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || | ||||| ||||| | |||||| Sbjct 35232 GTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >SEQ37497 Length=345 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| |||||||| || | || || | |||||||| ||||| || || || || || Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || | || |||||||| || || || ||||||||||||||||| ||| || || ||| Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 |||||||| || || |||||||| || | || || || ||||| || || ||||| Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 195133 ACTTGCAT 195140 | |||||| Sbjct 165 ATTTGCAT 158 Score = 100 bits (110), Expect = 6e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||| || | || || ||||| |||||||| |||||||| || | || || Sbjct 151 TCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGT 92 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| || | || |||||||| || || || Sbjct 91 ACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACC 32 Query 195039 TTCTTTGTCTTGAATTTT 195056 ||||||||||| ||||| Sbjct 31 CTCTTTGTCTTGTATTTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108526919166953