Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 183 2e-41 seq2773 114 8e-21 SEQ58356 104 2e-17 >SEQ21942 Length=42535 Score = 183 bits (202), Expect = 2e-41 Identities = 585/903 (65%), Gaps = 41/903 (5%) Strand=Plus/Minus Query 5657 TGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCGATTCG 5716 || ||||| | ||| |||||||||||||| |||||||| || || | |||||| | | | Sbjct 35478 TGGACTCCAGTCCAACCACGACCGTACATCGCTACACCAACTATAATCTTCTTAGGGTTG 35419 Query 5717 ACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGGGTTC 5776 || | || ||| ||| || | | ||| || || ||||| || || ||| ||| Sbjct 35418 ACTCCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCTTTTGGATTC 35359 Query 5777 CACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGA---TCCGTTAACGACCAGGCACCC 5833 || | ||| || || | ||||| || ||||| ||| || || ||||| || || Sbjct 35358 CATGCTGGTGCATATAACGGTGTTTGATGTCCAAGAGTGTCATTT---GACCACGCTCCT 35302 Query 5834 TTGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGCGCTGGC--GTAGT 5891 || ||||||| |||| | |||||| ||||| | ||| || || ||| | ||| | Sbjct 35301 TTAAAGTCGTAACTCATTAAAAAGATATGATCCATATA--TTGCTGAGCTTTCCTGTAAT 35244 Query 5892 CGACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCAATTGTAACCGTTTAC 5951 | || || | |||||| || || || | ||||| ||||| || | |||| Sbjct 35243 CAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTTCTTAC 35184 Query 5952 CCCGCTTCTCGCCCAACTCGTCAAGCATCACGCGAAGTTC------CCGC--AACAAAAG 6003 | || | | | ||||| ||||| | || | || | || ||| || Sbjct 35183 CGGTCTCCGTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATCAGCTGGACATAAA 35124 Query 6004 AGTGTACGTATTGCGGTCCACCTCGGCATTACCCAACACAGGATTAGCACCCTTTCCACC 6063 | ||| | |||||||| || || |||||||||||| |||||||| Sbjct 35123 CTTCACCGTCATTTGGTCCACCGAGG--TT---------AGGATTAGCACCTTTTCCACC 35075 Query 6064 CGGAAACTCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAACTCGCG 6123 || |||||||| |||||||| || ||||| ||||| ||||| || | || || || Sbjct 35074 AGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAGGAAGTCTTT 35015 Query 6124 GACACTTGTGACGAACACCTTACGTTTGGAGTCATCGTTCATAAAATAAAACGGATCGCT 6183 || || || || | | ||| | ||| | | || || || ||||| Sbjct 35014 CACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAAGAAGTAGAATGGATCTGC 34955 Query 6184 CAACGTCCACCCCCCTATGGATGGTAGGACTGTCAACGAAGGGTTGTGACGTTTGATGGC 6243 ||| ||||| ||||| || ||||| || || ||| ||| | |||| | | Sbjct 34954 CAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTGTTTTAAAGA 34895 Query 6244 CATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCTGTGG 6303 |||||| || |||||||| || ||||| | |||||| | | | || |||||||| Sbjct 34894 CATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTGG 34835 Query 6304 TTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAGCGCA 6363 |||||| || || ||||| |||||| ||| || |||||||| || || || ||| Sbjct 34834 TTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCGCCCGCTGCA 34775 Query 6364 GGATTTCTGTAGCGCCTCAAAGGAA------TTGGGAATCTGCTTGAGGGCGTCGTTTAT 6417 ||| || | || | |||| || | || | || | |||||| || Sbjct 34774 AGATCGTTGCAAAGCTT----GGAAACTTCCTTCG--ATTTCTTTCAAACTGTCGTTAAT 34721 Query 6418 GCCGTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGG 6477 |||| ||| ||||| || || || || ||||| || || || || ||||| || || || Sbjct 34720 TCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAGATTCGGAATGGG 34661 Query 6478 TACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGAC 6537 |||||| || | || || | ||| || || ||||||||||| ||||| || ||||| Sbjct 34660 TACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGCTCCGAC 34601 Query 6538 GAC 6540 ||| Sbjct 34600 GAC 34598 >seq2773 Length=85211 Score = 114 bits (126), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || || ||||| | ||| |||||| |||||||| ||||| || ||| |||| |||| Sbjct 67517 AATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCT 67458 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 ||||| |||||||| ||||| || ||||| || |||||| | || | || |||||||| Sbjct 67457 TCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 67398 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 || || |||||| || || || | || | || || || | || |||| Sbjct 67397 TGGATTTTGGCTTTGAC--ATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGG 67340 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || |||||||| |||||||||||||| Sbjct 67339 TCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 || |||||||||| || ||| || |||||||| || || || || | || |||| Sbjct 66377 AATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCT 66318 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || |||||||| || || || || || || ||||| || | || | || || ||||| Sbjct 66317 TCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCC 66258 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || ||| || | | || | || | |||||| || | |||||||||| Sbjct 66257 TGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTT 66198 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| ||||| ||||||||||| |||||||| || Sbjct 66197 TTTCCAGTGAGTGTCTTCACAAATATCTGCATTTT 66163 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| |||||||| ||||| || ||| | ||| |||| ||||| || || || ||||| Sbjct 66584 TCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAA 66525 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | || || ||||| || ||| || ||| | Sbjct 66524 ATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTT 66465 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || || | ||| || || || || |||||||| || ||| Sbjct 66464 TCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACA 66405 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 66404 AAGATTTGCAT 66394 >SEQ58356 Length=38410 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || ||||| || |||||||| || | || | ||| || |||||||| || ||||| Sbjct 35037 TTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCG 35096 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || | | || |||| ||||||||||| || ||||| || | |||||||| || | Sbjct 35097 GATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGT 35156 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | ||||| || || ||| || ||| || | | || | || |||||| Sbjct 35157 GGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCC 35216 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || |||| ||| |||||||| ||||| || || ||||| || |||||||| Sbjct 35217 ACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324367887296952