Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 600 1e-166 SEQ58105 134 2e-26 seq7993 98.7 1e-15 >SEQ17521 Length=26855 Score = 600 bits (664), Expect = 1e-166 Identities = 1207/1792 (67%), Gaps = 28/1792 (2%) Strand=Plus/Minus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||| ||| || || ||||| | |||| ||| || | ||| || ||||||||||| Sbjct 4008 TTTGGATTTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATA 3949 Query 47027 CATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATA 47086 ||| || || |||| ||| | |||| |||| ||||| || || | |||| ||| Sbjct 3948 CATGCCTGTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATA 3889 Query 47087 ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | | ||||| | | ||| || |||| ||| ||||| || || ||||||||||||||||| Sbjct 3888 ATTTGGTTCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATC 3829 Query 47147 AGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 ||| ||||| | | | || | | || ||||||||||| ||||| | | | | Sbjct 3828 AGCAGCCATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCT 3769 Query 47207 AATGTCTTCTGGGA---GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgt 47262 ||| |||| ||||| |||| | |||| |||| || || || | | ||| | Sbjct 3768 AATATCTT-TGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGAT 3710 Query 47263 tttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAA 47322 |||| | |||| ||| | | | || ||| || | | ||||||||| | || | Sbjct 3709 TTTTCATGTCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCA 3650 Query 47323 CAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTA 47382 ||| |||||||||||| |||| ||||| | |||||||| ||| ||||||| | Sbjct 3649 CAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAA 3590 Query 47383 TAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATA 47442 ||||||||||| |||| || || || || ||||| || ||||| | || | || | Sbjct 3589 AGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCA 3530 Query 47443 AGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGAT 47502 ||| | | ||||| ||| ||| | ||||||||| |||| Sbjct 3529 GAGAATTACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGAT 3470 Query 47503 CTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCAT 47562 | | || |||||| | |||| |||| | ||| |||| || | ||| ||| | Sbjct 3469 CAGTGGGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTT 3410 Query 47563 TATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTAT 47622 ||||| ||||| || | | | || | |||||| || |||||||| || | | Sbjct 3409 CATATGAACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGT 3350 Query 47623 AATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGAT 47682 |||| || || |||||||| | | ||||| | ||||| | |||| |||| | Sbjct 3349 AATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGT 3290 Query 47683 ANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAG 47742 | || | ||| || || ||||| || |||||||| ||||||||||| Sbjct 3289 AGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTC 3230 Query 47743 TTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTA 47802 |||| || | ||||||||| | |||||| | || | ||||||||||||||||| Sbjct 3229 GCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTA 3170 Query 47803 GANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTAT--T 47860 | || |||| |||| || | ||||| || | ||| | Sbjct 3169 GGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCAT 3110 Query 47861 TATA-ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTG--G 47917 || |||||| |||| | || ||||| |||| ||||||||| ||||| |||| | | Sbjct 3109 CATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTG 3050 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || || |||| || |||||| | ||||||||||| |||||| || || || | ||||| Sbjct 3049 AT--GTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTT 2992 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 |||||| | ||||||||| || ||||| | ||| || || || || ||||| | Sbjct 2991 CTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAAC 2932 Query 48038 CTGAGATTCAATGATAGATTTCCA-AACAGTCCTAGCCTTTA------TAACAGCTCTAG 48090 || | ||| | |||| ||||| || | | | || |||| ||||| ||| Sbjct 2931 TTGTGCTTCTACAATAGCCTTCCATAAAACTTGT-GCTTTTACTTGTTTAACAAATCTTT 2873 Query 48091 CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT 48150 || ||| |||| | ||| || | |||| ||| || || || | ||| | | Sbjct 2872 TTTCATTCTCATACT----TTTCATAAAGGGCTTC--AAACTCTTCTCCCCA-ACAATCT 2820 Query 48151 -CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209 | || |||||||| |||| ||||||||||| ||||| |||| |||| ||||| Sbjct 2819 GCCAAACCAGGACAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTT 2760 Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCA 48269 ||||||| | |||||||||||| | ||| ||| || ||||||| || | |||||| Sbjct 2759 TTCATAAACAAATCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCT 2700 Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| ||||| |||| || || | ||| || | | ||| | |||||||||||||||| Sbjct 2699 TTACCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAA 2640 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 |||| || | | | ||||| || || ||||| |||||||||| ||||||||| || || Sbjct 2639 TATACAGCAAATGCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTG 2580 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 ||||| ||||||||||||||||||| |||||||||| |||||| || || | ||| | Sbjct 2579 TTATATACTCTTAACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACAT 2520 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 | || |||||| ||| || || || || |||||||| ||||||||| Sbjct 2519 GTACCTTTAGCTCGGATACAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATC 2460 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 | ||||| |||| || || ||||| ||||| || ||||| |||||| |||| ||| Sbjct 2459 AAGGCACATTGTTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAAT 2400 Query 48570 AGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCA 48629 | |||||| |||| ||| || ||| | | | |||||| || ||| || Sbjct 2399 AAGAAACAAGATGACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCG 2340 Query 48630 TGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCAT 48689 ||| | || | ||||| || || || || || || | ||| | ||||| || || | Sbjct 2339 TGAGTGAAATACTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCT 2280 Query 48690 TGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAA 48741 ||||||||| |||| ||||||||||| ||||| ||| ||||| ||| ||| Sbjct 2279 CCATGTATACCAATAGCTACACGCATTAGCATATGTTGTGGTCTCTCAGCAA 2228 >SEQ58105 Length=99015 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 |||||| || || ||||||||||| ||||| | || |||||||| || ||||||||| Sbjct 17299 TCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCTTTAACCAAAAGATAGAAGCA 17240 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || || || || ||||| ||||| |||||||| || || | | ||||||| | Sbjct 17239 AAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATGCTACAATACGTTCTCCAAAT 17180 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | ||| || | |||||||| || ||||| || ||||||||||| ||||| ||| Sbjct 17179 GTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTGCCTTCTTTTTAACACAAGGC 17120 Query 19183 ATTGTCTCTATAGAATTAAATA 19204 | || ||||||| |||||||| Sbjct 17119 AAAGTTTCTATAGCATTAAATA 17098 Score = 116 bits (128), Expect = 4e-21 Identities = 89/104 (86%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 || |||| |||||||| ||||||||||| |||||||| ||||| || |||||||| |||| Sbjct 16172 TACCTTT-GATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACA 16114 Query 19505 TGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTA 19548 | | ||| ||||| |||| || ||||||||||||||||||||| Sbjct 16113 TTTCCCAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Score = 100 bits (110), Expect = 3e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 ||||||||| || |||| |||||| || || || || || || || || |||| || || Sbjct 16436 GTACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAACCCATAGAAGAATCTGGCCTC 16377 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | || || || |||||| || || | ||||||||| || ||||||||| Sbjct 16376 AGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTTTCATTGACAATTCCATCAGA 16317 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA 19416 || ||||||||||||| || |||||||| |||||| | ||| Sbjct 16316 TGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATGTCTCTCA 16274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/151 (74%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 18603 ATGTTATGGTTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTAC 18662 ||||||| ||||| ||| ||||||| | ||| ||| || ||| | | |||||| Sbjct 18330 ATGTTAT---TAAAACTCAGCATCCAATGTAAACACATTATCCTCAGGATCAGCCATTAC 18274 Query 18663 TCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGA 18722 |||| ||| || ||||| | ||| | || ||||||||||| || ||||| ||||| || Sbjct 18273 TCCCCATTTCTGGTATTCACCTACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAAGA 18214 Query 18723 TATACATTCCATAAAATCAAATGGAtttttt 18753 || | |||||| ||||||||||| ||| Sbjct 18213 GATGAGGTTCATAAAGTCAAATGGATTCTTT 18183 >seq7993 Length=145898 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/366 (67%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 136632 TAATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTA 136691 ||||||| || || || ||| | || ||| | ||| |||||||||| | || | | Sbjct 34921 TAATGACACCAGTTTTACCTATGCTTGCTGAAGCTTGTAAATCTGTAGAGATGGCTATGA 34862 Query 136692 AAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTC 136751 | || | ||| |||||||| ||| | || || |||||||| |||||| | || ||||| | Sbjct 34861 AGAAATGTCCTAATGGAATGTTTTCGGAGATCAAATATGATGGAGAAAGAGTTCAGGTGC 34802 Query 136752 ACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATA 136811 | || || ||||| | ||| || || | | |||| || |||| ||||| Sbjct 34801 ATAAAAAAGGAAAAGAGTTTAAATACTTCTCTCGTGCTTTGAAGCCTGTAATGGCACATA 34742 Query 136812 AAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTA-AAAATGT-ATCATCTCTTAT 136869 | ||| || |||| || ||| | || |||| ||| |||| || || |||| ||| Sbjct 34741 AGGTTTCCCATTTTAAAGATTATCTTCCCCAAGCATTTCCAAAAGGTGATGATCTAATAT 34682 Query 136870 TTTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT---AAACCATTACCATTTGGCAG 136926 | |||| | || | || | |||||| |||| ||||| | || ||||| | Sbjct 34681 T--AGATGCTGAGGTTTTAATGGTAGATGTCAATACCGGAAAACCTCTTCCTTTTGGTAC 34624 Query 136927 TTTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGA 136986 | ||||| |||||| | || | ||| ||| || | ||||| | | ||||||||| Sbjct 34623 ACTAGGTATTCATAAACAATCAGAGTTTAAAGATGCACAAGTATGTCTGTATGTATTTGA 34564 Query 136987 TTGTTT 136992 ||| || Sbjct 34563 TTGCTT 34558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561636916688760