Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 390 9e-104 SEQ58356 165 6e-36 seq2773 134 1e-26 seq2744 132 4e-26 seq4618 127 2e-24 SEQ37497 100 2e-16 seq3747 87.8 1e-12 >SEQ21942 Length=42535 Score = 390 bits (432), Expect = 9e-104 Identities = 804/1192 (67%), Gaps = 23/1192 (2%) Strand=Plus/Minus Query 42263 AGCGTTCAACAAATCGCCGTTGTCAGCGTCAATCTCCCAAGCAAACAATCCGCCTAAATC 42322 ||| ||||| || || || | || || || || ||||| |||||||| || || | | Sbjct 35776 AGCATTCAATAAGTCCCCAGTATCTGCATCTATTTCCCACGCAAACAAACCTCCAAGCTT 35717 Query 42323 ATTTTCGATCACATATTGCGCTTTGTCCAACACCGATTCGGCGCTGTCATAACTAATCAA 42382 ||| | | ||||| | |||| || | || ||| | |||| || |||| | Sbjct 35716 ATTATTTCTAACATACTTTCCTTTCTCTATAACGGATCTTGGATTGTCGTATGTAATTAG 35657 Query 42383 ATTCCCCGTATCTTGTTGAAAGACATACGCGGCTTTTGCCGTTTTATCATATGTGTATTC 42442 || ||| || | | | |||||||| | |||| |||| |||||||| | | || Sbjct 35656 ATCCCCTGTGGCAGGACGGAAGACATATGGCGCTTGTGCCACATTATCATAATGGAACTC 35597 Query 42443 GTAAT------CTTTTAGATTATTTTTAATCTGTCTATAGTCTACGACGCCATCTTCCCA 42496 | | || | | |||| ||| | ||| ||||| || || ||||| | ||| Sbjct 35596 CCATTTCCCTGCTGCAATTTCATTTGCAATTTCTCTGTAGTCGACCACACCATCCTGCCA 35537 Query 42497 AGTACCCGAAACTGGACCTGTCGCAATACCCGTGAAGGGATTATTGTTTTGGTAATTGCT 42556 || || | |||||||| || | || ||||| |||||||| | | ||| || Sbjct 35536 CGTCCCTTTACAAGGACCTGTGGCTACTCCAGTGAAAGGATTATTATCTGTGTAGTTTTG 35477 Query 42557 TACTCCGGTCCAACCTCGTCCGTACATGGCCACGCCTAAAATTATTTTTTGAGGTTTCAC 42616 ||||| |||||||| || |||||||| || || || | || || || | ||| || || Sbjct 35476 GACTCCAGTCCAACCACGACCGTACATCGCTACACCAACTATAATCTTCTTAGGGTTGAC 35417 Query 42617 TTTTTGTTTCAAAAGCGTTTGAACGGCATAATCTGCCGTGTAATGTTCGTTTTCGTTCCA 42676 | ||| || || ||| ||| || | || | ||||| ||| ||| ||||| Sbjct 35416 TCCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCTTTTGGATTCCA 35357 Query 42677 TTCGGGAGCATACAGATTTGTTTGATGGCCCAAATCTGAATTTGACCAAGCACCTTTAAA 42736 | | || ||||| | ||||||||| || | | ||||||||| || |||||||| Sbjct 35356 TGCTGGTGCATATAACGGTGTTTGATGTCCAAGAGTGTCATTTGACCACGCTCCTTTAAA 35297 Query 42737 GTCATAGCTCATTAAAAATATTTTATCCAAATAGTTTTGAGCATCGTTGTAATCGACAAT 42796 ||| || ||||||||||| || | ||||| ||| | ||||| | ||||||| || | Sbjct 35296 GTCGTAACTCATTAAAAAGATATGATCCATATATTGCTGAGCTTTCCTGTAATCAACTAC 35237 Query 42797 AGCGATTTTGTCGTCTCCCGCACTAATTGCGCTAGTCAATTCGTATTTGCGATTAGTTTC 42856 ||| || || || |||||||| ||| |||| ||| ||||| | || || Sbjct 35236 TTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTTCTTACCGGTCTC 35177 Query 42857 GTTTTCTAGTTCGTCCAGCATGTCGCGCAATTCTCGTAACAAAACTACATACGTAAGACC 42916 | ||| |||| |||||| || || || ||| | || ||||| ||| Sbjct 35176 CGTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATCAGCTGGACATAAACTTCACC 35117 Query 42917 GTCATTTTGAGGATCTCCAATTGTCGGATTAGCTCCTTTACCACCGGGAAATTCCCAATC 42976 ||||||| || | || | | |||||||| ||||| ||||| || || |||||||| Sbjct 35116 GTCATTT---GGTCCACCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATC 35060 Query 42977 AATATCGACGCCGTCAAAAAATTTCCAAGTGAGCAAAAACTCACGTACTGAATCCACAAA 43036 ||| || || ||||| || ||||||||||| | | || || ||||| ||||||| Sbjct 35059 AATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAA 35000 Query 43037 ------TATTTTACGCTTGTTTGCATCGCTGAAAAAATAAAACGGGTCGGACAATGTCCA 43090 | |||| ||| | |||| || || || || || || | ||||||||| Sbjct 34999 ACGATCTCTTTTTACCTTAT---CATCA---AAGAAGTAGAATGGATCTGCCAATGTCCA 34946 Query 43091 TCCACCTATCGAAGGTAACACTTTAAGATGAGGGTTAGCTTTTTTGGCTGCCATTAATTG 43150 || || || || || | || || |||| ||| |||||| ||| | ||| | ||| Sbjct 34945 GCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTG 34886 Query 43151 ACCAAAGTTGCCTTTGTACGGTTCATTCCACGAGGAAACACCTTTTTGTGGTTTCTGTAT 43210 ||||||||||||||||| ||||| ||||| ||||| | ||| || |||||||| |||| Sbjct 34885 TCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAA 34826 Query 43211 AGCCGCCCACGGATCGTGTATGGAAACTTTGAAGTCGCTTCGACCCGCA-CAAGATTTTT 43269 ||| ||||| || ||||| || |||||||||||||| ||| ||||| |||||| || Sbjct 34825 AGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCG-CCCGCTGCAAGATCGTT 34767 Query 43270 GAAGAGCTTCAAAACTGCCAGGAATAGATTTTAAACTGTCATTAATGCCGTCACCGCCGC 43329 | | ||||| ||||| || || ||| |||||||| ||||| ||||||||||| | Sbjct 34766 GCAAAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCAC 34707 Query 43330 ATATCGGAATAAATCCGTACAACAAATGAGACAAATTGGGTAAAGGCACTTTGTTGACAG 43389 | || || ||||||||||| | | ||| | | ||| || | || || || | || | Sbjct 34706 AGATGGGGATAAATCCGTAAAGAAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTG 34647 Query 43390 GAAATGAACGACCGTATACGCCCCATTCTACAAAATAAGCGGCCACGGCTTT 43441 | ||| | | ||| || ||||| || ||||||||||| | ||| |||| Sbjct 34646 GGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGCTCCGACGACTTT 34595 >SEQ58356 Length=38410 Score = 165 bits (182), Expect = 6e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || ||||||||||| | || || | ||| | ||||| || || || |||||||| ||| Sbjct 35037 TTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCG 35096 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | || | | |||| |||| || ||||| ||||| |||||||| || ||||| || Sbjct 35097 GATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGT 35156 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| || |||||||||||||||||| ||||||| |||| | ||| || || | ||| Sbjct 35157 GGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCC 35216 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || || |||| ||||| || || | ||||| || ||||||||||| ||| Sbjct 35217 ACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATTGTT 35270 >seq2773 Length=85211 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| |||| ||| ||||| || || ||||| |||||||| ||||| || |||||||| | Sbjct 66394 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66335 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | || || ||||| || || | |||||| |||||||| | Sbjct 66334 ACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAG 66275 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| || |||||||| ||||||| |||| | || || || | || | Sbjct 66274 GGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAA 66215 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | ||||| || || | || || |||||||||||||| Sbjct 66214 CCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| ||||||| | |||||| ||||| || | || ||||||||||| || ||||| || Sbjct 67536 ATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTC 67477 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | |||| |||| |||| ||| || || ||||| || | |||||||| || || Sbjct 67476 AGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 67417 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 || |||||||| || || || ||||| ||| ||| | || | || || || | ||| Sbjct 67416 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTC 67357 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| | || || || || | ||| || ||||| |||||||| Sbjct 67356 TACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||| | ||| | ||| | ||||| ||||| |||||||| || ||||| || | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| |||||| || ||||| || | || || || || || || Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| ||||| ||||| |||| | ||| || || | || ||| Sbjct 66500 ATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACT 66441 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||| || || || | |||||| ||||| || ||||| Sbjct 66440 TCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 >seq2744 Length=156805 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || ||||| || || ||||||||||| || ||||| || | | Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||| ||||| || | | ||| || || ||||| Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||||||||| |||||| |||| | |||||| || | ||| || Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || | |||||||| || | || |||||||| ||||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 >seq4618 Length=10119 Score = 127 bits (140), Expect = 2e-24 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 101218 TTTTTATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGA 101277 ||||| | || | ||||| ||| || || || || | | || ||||| || || || Sbjct 680 TTTTTCTATA-TGTACTATTAATTGCCACCCCTCAATCTCAGTACCAAATGGAGTGTGGA 622 Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 ||||||||| |||||||| || | || || | | |||| || | ||||| || ||||| Sbjct 621 TTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAA 562 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAAT 101397 || | | ||| || || || || || || ||||| ||||||||||| || ||| | Sbjct 561 GATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATT 502 Query 101398 TTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 ||| | ||||| || | || ||||||||||||| |||||||| || || || || || Sbjct 501 TTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGAC 442 Query 101458 AAATATCTGCAT 101469 || || ||||| Sbjct 441 GAAAATTTGCAT 430 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || ||||| || |||||||||||||| |||||||| || | | Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | || || || ||||| || | | ||| || || || || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||||||||| || ||| |||| | ||||| || | || ||| Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| |||||||| || || || || || || || ||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | | || ||||| || || |||||||| || |||||||| || | | Sbjct 200 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAG 141 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| || | | ||| || || || || Sbjct 140 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 81 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| ||||| ||||| || ||| |||| | ||||| || | || ||| Sbjct 80 ATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 21 Query 101423 TCAAGAGTGACCGTTTTGCC 101442 |||||||||| |||||||| Sbjct 20 TCAAGAGTGATGGTTTTGCC 1 >SEQ37497 Length=345 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| |||||||| || | || || | | |||| || | || || || ||||| || Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | | ||| || || || || || || ||||| ||||||||||| || ||| |||| Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | ||||| || | || ||||||||||||| |||||||| || || || || || || Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 101462 ATCTGCAT 101469 || ||||| Sbjct 165 ATTTGCAT 158 >seq3747 Length=111519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 101347 CTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGT 101406 ||| ||||| || || || || || ||||||||||| || ||| ||| |||| | || Sbjct 105184 CTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTTTCGATTGT 105125 Query 101407 GTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTG 101466 |||||| | ||| || |||||||||| || ||||| || | || || ||||| ||||| Sbjct 105124 GTCAGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAAATCTG 105065 Query 101467 CAT 101469 ||| Sbjct 105064 CAT 105062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395954046005763