Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 273 2e-68 seq2773 122 7e-23 seq2744 107 2e-18 seq4618 98.7 8e-16 >SEQ21942 Length=42535 Score = 273 bits (302), Expect = 2e-68 Identities = 784/1192 (66%), Gaps = 25/1192 (2%) Strand=Plus/Minus Query 105820 TTCATGGCATTGAGTAAATCGCCGTTATCGGCATCTATTTCCCAAGCAAACAAACCGCCC 105879 ||||| ||||| | ||| || || |||| |||||||||||||| ||||||||||| || Sbjct 35781 TTCATAGCATTCAATAAGTCCCCAGTATCTGCATCTATTTCCCACGCAAACAAACCTCCA 35722 Query 105880 AGTTTGTT---TCGATCGACATATTTAACCTTGCCCAAAACAGAATCGACGCTA-TCAAA 105935 || || || || | ||||| || | || | | ||| || || | | || | Sbjct 35721 AGCTTATTATTTCTA---ACATACTTTCCTTTCTCTATAACGGA-TCTTGGATTGTCGTA 35666 Query 105936 CGAAATTAAATCCNNNNNNNNNNNNNCAAAAACGTACGAAGCTTGAGCGACATTGTCAAA 105995 | ||||| |||| || || || | ||||| || ||||| ||| | Sbjct 35665 TGTAATTAGATCCCCTGTGGCAGGACGGAAGACATATGGCGCTTGTGCCACATTATCATA 35606 Query 105996 CGTGTACACGTA----CGTGTT-CAGTTTTGTTTG-AATCTGTCGGTAATCTACGACGCC 106049 | || | | | || | || ||| |||| ||| | || ||| || || || || Sbjct 35605 ATGGAACTCCCATTTCCCTGCTGCAATTTCATTTGCAATTTCTCTGTAGTCGACCACACC 35546 Query 106050 GTCCTCCCAAGTGCCCG-ACACGGGCCCGTTGCCGATTCCCGAAAAATAGTTGTTGCCAG 106108 |||| ||| || || ||| || || || || | ||| | ||| || || | | Sbjct 35545 ATCCTGCCACGTCCCTTTACAAGGACCTGTGGCT-ACTCCAGTGAAAGGATTATTATCTG 35487 Query 106109 TATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTCCTACGATTATTTTGT 106168 | || || || || ||||| || || |||||||| || || || || || || || | Sbjct 35486 TGTAGTTTTGGACTCCAGTCCAACCACGACCGTACATCGCTACACCAACTATAATCTTCT 35427 Query 106169 TGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTGTTGTGTATTTTTCTT 106228 | || | ||| |||| | | | || | | | |||||||| |||||| Sbjct 35426 TAGGGTTGACTCCTTGGGCTAAGAGATTTTTAACTCCAAAGTCAGTTGTGTAGGTTTCTT 35367 Query 106229 CGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGATCTGTG-TTCGACCAC 106287 | |||||| || ||||||| || ||||||| || ||| ||| || |||||| Sbjct 35366 TTGGATTCCATGCTGGTGCATATAACGGTGTTTGATGTCCAAGAG-TGTCATTTGACCAC 35308 Query 106288 GCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATATTTTTGTGCGTCGTTA 106347 || |||||||| ||||||||||| | || || | |||| ||||| || || | | Sbjct 35307 GCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATCCATATATTGCTGAGCTTTCCTG 35248 Query 106348 TAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTGGTTAATTCGTAGAAT 106407 || | || || || || || | || || || |||||| || | ||| || Sbjct 35247 TAATCAACTACTTGGATCTTATCCCAACCAGCACTAATAGCGGATGTCAGTTCATATTTC 35188 Query 106408 TTGCCCGTTTGCAGTTCTAATTCGTCTAGCATGGCGCGCAACTCTTGCAACAGCACGACA 106467 || || || | | || |||| ||||| | || ||||||| || |||| |||| Sbjct 35187 TTACCGGTCTCCGTGGATAGCTCGTTCAGCATTTCACGTAACTCTTTCATCAGCTGGACA 35128 Query 106468 TATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGA-AGGATTGGCCCCTTTGCCGCCTGG 106526 || ||| |||| || | || || | | |||||| || ||||| || || || Sbjct 35127 TAAACTTCACCGTCA--TTTGG--TCCACCGAGGTTAGGATTAGCACCTTTTCCACCAGG 35072 Query 106527 AAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTGCAAAAATTCCTTTAC 106586 || |||||||| || || || || || || ||||||||| ||| | || || || || Sbjct 35071 GAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCAAGTTTGGAGGAAGTCTTTCAC 35012 Query 106587 AGAATTTACAAACACGTT-TCTTTTTTCAACGTCATGCATAAAATAGAAGGGGTCTGATA 106645 || ||||| ||| | ||||||| | |||| | || ||||| || |||| | Sbjct 35011 TGATGCCACAAA-ACGATCTCTTTTTACCTTATCATCAAAGAAGTAGAATGGATCTGCCA 34953 Query 106646 GCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTGCCAATTTAGCCGCCA 106705 ||||| || || || || ||||| || || | || || | || ||| | || Sbjct 34952 ATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGGTCTAGCTTGTTTTAAAGACA 34893 Query 106706 TCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACACGCCTTTTTGCGGCT 106765 ||| ||||||||||| || |||||||| |||||||| | ||||| || || || || | Sbjct 34892 TCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAGGACAAACCCTTCTGTGGTT 34833 Query 106766 TCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGGCGCGCCCTTTGCATG 106825 | |||| || ||||| || ||||| ||||||||||| || || | ||||| |||| | Sbjct 34832 TTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAG 34773 Query 106826 ATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCATCGTTTATTCCATCAC 106885 || |||||||| || |||||||| ||| ||| || ||||| ||||| |||| Sbjct 34772 ATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTTCAAACTGTCGTTAATTCCGTCAC 34713 Query 106886 CGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGGGCAGCGGGACTTTAT 106945 |||| |||||||| ||||| ||||| | | ||||| | ||| || | || || |||| Sbjct 34712 CGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGTAAGATTCGGAATGGGTACCTTAT 34653 Query 106946 CTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACGCGGCGAC 106997 |||| || || || | || || ||||| || |||||||| || |||| Sbjct 34652 CTACTGGGAATTTTCTAGGGTAAACACCCCACTCCACAAAATAAGCTCCGAC 34601 >seq2773 Length=85211 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || || || || ||||| ||| ||||||||| Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | || |||||| ||||| || || | || ||| ||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| |||| |||||||| || |||||| | |||||| || || | ||||| ||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| |||||||| || ||| |||||||| | |||||||| || || Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAAT 66851 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || || |||||||| ||| |||||||| Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || |||| |||||| ||||| || || | || ||| || Sbjct 67365 AGATACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 67424 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 |||| |||| |||||||| || |||||| |||||||| | || |||| | || || Sbjct 67425 ACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTAT--CTGACTAC 67482 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||||||||| ||| ||||| | |||||| | | |||||||| Sbjct 67483 AACATTCAAAAAGAATCCACTTTGCACTTAGTATTACGTCTCCGAGGAGG 67532 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| ||||||| || |||||||| ||| |||||||| Sbjct 67078 ATGCAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCG 67137 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| |||||| || || || || | || ||| ||| Sbjct 67138 GACACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAA 67197 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||| ||||||||||||| || || ||| |||||||| ||| || | || || || Sbjct 67198 CAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAAT 67257 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTA 28763 ||||||||||| || ||||| ||| | ||| Sbjct 67258 ATTCAAAAAGAGTCGACTCTTCACCTTGTA 67287 Score = 105 bits (116), Expect = 6e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||| |||||||| || ||| | || || |||||||| ||| || || || Sbjct 66162 AAAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 66221 Query 28610 TTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 || || || | | || | || || |||| || |||||||| || | || | Sbjct 66222 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAG-GACAAAGAAGGTATCCCTCCCG 66280 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 |||| ||| | |||||||| || || ||||| | |||||| || || | |||| Sbjct 66281 ATCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATT 66340 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||||||||| |||||||| || ||| |||||||| | |||||||| || || Sbjct 66341 ACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAAT 66395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || |||||||| ||| |||||||| Sbjct 66849 AATGCAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTC 66908 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | || | || |||||| ||||| || || | || ||| || Sbjct 66909 AGATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 66968 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| ||||||||||||| || || ||| |||||||| ||| | | || || || Sbjct 66969 ACAGCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAA 67028 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| || ||||| ||| Sbjct 67029 CATTCAAAAAGAGTCCACTCTTCAC 67053 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| ||||| | || ||||| || |||||| ||| || || || Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | ||| |||||| |||||||| || | || || || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | || || ||||| ||||| ||| |||||||| || || | || || || Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAA 66572 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||||||||| |||||||| ||| Sbjct 66573 CATTCAAAAAGAGTCTACTCTTCAC 66597 >seq2744 Length=156805 Score = 107 bits (118), Expect = 2e-18 Identities = 166/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 || ||||| || |||||||| ||| | || || ||||| |||||| || |||||| Sbjct 156567 AACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCT 156626 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | ||| ||||| ||||||||||| | || ||| Sbjct 156627 TCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGAC 156686 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATT 28728 || ||||| ||||||||||| || || || | |||||| || | ||| | | || | Sbjct 156687 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCT--CTGACT 156744 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||| ||||||||||| || || || ||||| | ||||| |||| ||||| Sbjct 156745 ACAACATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 156799 >seq4618 Length=10119 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || || || || || || |||||||| || ||| || || ||| Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCA 261 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| ||||| ||||||||||| | || ||| || Sbjct 262 GACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAG 321 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 ||||| || ||||||||||||||||| | |||||| | | ||| | | || || | Sbjct 322 CAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCT--CGGACTACA 379 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || |||||||||||||| || || ||||| | ||||| |||| ||||| Sbjct 380 ATATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGGGAT 431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425056606038261