Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 201 6e-47 >SEQ17521 Length=26855 Score = 201 bits (222), Expect = 6e-47 Identities = 298/420 (71%), Gaps = 2/420 (0%) Strand=Plus/Minus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||||| | ||| ||||| |||||| |||||| | | |||||| |||||||| ||| Sbjct 2798 GGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATCTGGTATC 2739 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | |||||||| || || || |||| | ||||||||| || ||||||||| ||| Sbjct 2738 CATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTCTTTTTCAGA 2679 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 ||||| || ||||| | |||||| ||||||||||||||||| | |||||| ||| Sbjct 2678 TCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATGCCCCTGGA 2619 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 | || |||||||||||||| ||||| || || || | ||| | |||||||| Sbjct 2618 CGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAACATTGGG 2559 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAAT-CTTGGATCCTGTCGATCTAATATC 26190 || | |||| |||| | || ||||||| | || | || | ||| | | || ||| Sbjct 2558 ACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTA-CCTTTAGCTCGGATACA 2500 Query 26191 GTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGT 26250 |||| |||||| || || ||||| || |||| || || ||||| | | | || Sbjct 2499 GTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTTTCAGAGT 2440 Query 26251 ATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTG 26310 || | ||||| | || || ||| ||||||| | ||||| |||||||| || ||||| Sbjct 2439 GTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATGACAATTG 2380 Score = 100 bits (110), Expect = 1e-16 Identities = 337/515 (65%), Gaps = 10/515 (2%) Strand=Plus/Minus Query 24655 TTTTTCTAATGTAAATTGCTTAGCTGATACTGCTGGTTTAGTTCTAAGATAATACATTCC 24714 ||| |||| ||||||||| | || | |||| ||||| || | | ||||||||| || Sbjct 4002 TTTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCC 3943 Query 24715 AGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGATGTTAGTTTTGCAATGTTTGC 24774 ||||| | | | ||||| | |||||||| || || || ||||| || |||| Sbjct 3942 TGTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGG 3883 Query 24775 TGATTCTAAAAACAAGTTCATCGATTGAGCTTGGCAAACAAAACGTTGTCTATCTGCAGC 24834 | ||| | | ||| | || ||| |||| | ||| |||||| ||||| Sbjct 3882 TTCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGC 3823 Query 24835 TAAGTCAATGATCGTTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTC 24894 | | ||| | ||||||| || || || | |||| || || ||| | || || Sbjct 3822 CATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTAATATC 3763 Query 24895 AGTTGGAATACTTGCAATATTTTGAACTGATCCATT-TTCTCTC-AATA-GATTCAATCT 24951 | |||||| | ||||||| |||||||| ||||| || | |||| |||| | | Sbjct 3762 TTTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATT---TTT 3706 Query 24952 CATATTCGGTGTCCAA-AGAT-TAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATG 25009 ||| | | |||| | | || | || |||| |||||| | | || | || | Sbjct 3705 CATGT-CATCGTCCCACAAATCTGCTTGAGTCAA-ATCTCTCAAAAGATGATGGTTCACA 3648 Query 25010 ATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAA 25069 | ||||||||| || || |||| |||| ||| |||||||| ||||||||||| Sbjct 3647 ACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAG 3588 Query 25070 CATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGC 25129 |||||||||| || | || || | |||||||| |||||||| || | || || Sbjct 3587 GATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGA 3528 Query 25130 GAATTTCTCAAACCATATTTAACAATCTCTTGTTT 25164 ||||| | | |||| |||| | || | || ||| Sbjct 3527 GAATTACGAATTCCATGTTTAGCTATTTTTTCTTT 3493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252832886680925