Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 185 1e-41 >SEQ17521 Length=26855 Score = 185 bits (204), Expect = 1e-41 Identities = 898/1408 (64%), Gaps = 44/1408 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 ||||| | ||| | ||||| || || || || || || || |||||||||||||| | Sbjct 2239 CCACAACATATGCTAATGCGTGTAGCTATTGGTATACATGGAGAAGACATTGATTCAGCA 2298 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | || ||| | |||| | | |||| |||| |||||| | || || | || Sbjct 2299 ATTAACACCTACAATTTATTGTCTGAGAAGTAT-TTCACTCACGCCAGTCCTACTTTATT 2357 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||| ||| |||||||| || |||| ||| ||| | | |||| || || || Sbjct 2358 TTCTGCTGCTACTCCAAGACCTCAATTGTCATCTTGTTTCTTATTGGCCATGAAAGATGA 2417 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | || | || || |||| ||||| | | ||||| || || || | || || Sbjct 2418 CAGTATTGAGGGAATATATGACACTCTGAAACAATGTGCCTTGATATCTAAATCTGCAGG 2477 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAA---TAAATCTCGTATTCGGGGGAC 75507 || |||||| | || | || | | |||| || || || |||| || || Sbjct 2478 TGGCATTGGGCTTCATGTTCACTGTATCCGAGCTAAAGGTACAT---GTATAGCTGGCAC 2534 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 ||||||| |||| |||| || | |||||| | | |||| |||| |||||| | || Sbjct 2535 AAATGGTGTATCAAATGGACTTGTCCCAATGTTAAGAGTATATAACAGCACAGCCAGATA 2594 Query 75568 TGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 |||| |||||| || ||||| ||||| | | || || || || |||||||| Sbjct 2595 TGTAGATCAAGGTGGTAACAAGCGTCC--AGGGG-CATTTGCTGTATATTTAGAACCATG 2651 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAA----GGTGACGAAGAGG 75677 |||| | ||| | | ||||| || || | || || || ||| | ||||| | Sbjct 2652 GCATTCAGATGTGTTTGAGTT--TTTAGATCTGAA--AAAGAATACTGGTAAAGAAGAAG 2707 Query 75678 CTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTG 75737 ||| ||| || | |||| | | ||||| ||||| | || ||||| | |||| Sbjct 2708 TTCGAGCTAGGGAATTGTTTTATGCTTTATGGATACCAGATTTGTTTATGAAAAGAGTTG 2767 Query 75738 AGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGG 75797 | | || | ||| | | | ||||| | | || ||| | | || Sbjct 2768 AAAAAAATGAAAATTGGAGTTTGATGTGTCCCCATGACTGTCCTGGTTTGGCAGATTGTT 2827 Query 75798 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGA---GCCAATG 75854 ||| || |||||||||||||| || ||||||||| | || ||| | || Sbjct 2828 GGGGAGAAGAGTTTGAAGCCCTTTATGAAAAGTATGAGAATGAAAAAAGATTTGTTAAA- 2886 Query 75855 CGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 | | ||| ||| | | | |||||||||||| | || |||| || || || | Sbjct 2887 CAA--GTAAAAGCACAAGTTTTATGGAAGGCTATTGTAGAAGCACAAGTTGAAACAGGCA 2944 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 | |||| ||| | ||||| ||| | ||||||| |||||||| || || ||| | |||| Sbjct 2945 CTCCATTCATGTTATACAAAGATTCATGTAACAGAAAGAGTAATCAGAAAAATCTAGGAA 3004 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG--GATGAGAC 76032 |||| || | ||||| || || ||||| |||| |||||| | || ||||| Sbjct 3005 CAATTAAATGTAGTAATCTATGTACAGAAATAGTAGAATACACA--TCAGTAGATGAAGT 3062 Query 76033 GGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCAC 76092 || || || ||||| || || || || | | || ||| ||||| || | | || Sbjct 3063 AGCAGTATGTAATTTAGCTTCTATTGCTTTGAATATGTTTGTAAATGATGATA---GAAC 3119 Query 76093 TTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGT 76152 | ||| |||||| | | ||| | ||||| ||| | ||| |||| ||||| | | Sbjct 3120 GTACAATTTTGAAAAGTTAAAAGAAGTTACAAAAATTATAACCCAAAACCTAAATAAAAT 3179 Query 76153 CATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGAC 76211 || || |||| |||||| ||| ||| || ||| || ||||||||||| |||| Sbjct 3180 TATAGATGTCAATTATTATCCAGTTCCAGAA-GCTAAAAACTCCAATATGCGACATAGAC 3238 Query 76212 CTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTG 76271 | || ||| | || || |||||| | || |||| ||| | || |||||| | | || Sbjct 3239 CAATAGGTATTGGAGTCCAAGGTTTAGCTGATGCCTTTGTGCTGATGCGCTACCCTTATG 3298 Query 76272 ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCC 76331 | || |||| | | | || | || ||||| || || ||| ||| | | Sbjct 3299 AAAGTGAAAAAGCATTGTTGTTAAACCAACAGATATTTGAGACTATCTATTACGGAGCTT 3358 Query 76332 TGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTC 76391 |||| || || |||||||| || || | || ||| ||| ||| ||| || Sbjct 3359 TGGAAGCTAGCTGTGAATTAGCGGAGAAAGAGGGAGTTTATAGTTCATATGAAGGTAGTC 3418 Query 76392 CCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAA--GCTCAACTA 76449 | | ||||||| | | || |||||||||| |||| || || | | || || Sbjct 3419 CTGTTAGCCAAGGGATTTTGCAATTTGATATGT-GGAATAAGACGCCCACTGATC-TCTG 3476 Query 76450 CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 76509 || |||| || ||| || ||| || | | || ||||||| ||| | | Sbjct 3477 GGATTGGGTTGCTCTTAAAGAAAAAATAGCTAAACATGGAATTCGTAATTCTCTGCTACT 3536 Query 76510 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 76569 ||| || |||||||| || || || ||||| || | || |||||||||| ||||||||| Sbjct 3537 GGCGCCTATGCCAACGGCATCTACGGCACAGATACTTGGCAATAATGAATCCTTTGAACC 3596 Query 76570 ATACACAACAAACATCTACCTGAGAAGA 76597 || || |||| || |||| ||| || Sbjct 3597 ATTTACTTCAAATATATACCAAAGACGA 3624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596068787277920