Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 154 3e-32 seq4618 131 3e-25 seq2744 129 1e-24 SEQ37497 104 4e-17 >SEQ58356 Length=38410 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| ||||| || | | || ||||||||||||| ||| || |||||| ||||||| Sbjct 35038 TACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGG 35097 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 |||| || | ||| || | ||||| || ||||| || || | || ||||| || | Sbjct 35098 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 35157 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | || || ||||||||||| ||||| | ||||| |||| |||||||||||| | ||| | Sbjct 35158 GAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCA 35217 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || || || || ||||| || || || ||||| || ||||| |||||| Sbjct 35218 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq4618 Length=10119 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||| ||||||| ||| | ||||| ||||| ||||| Sbjct 438 AATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATT 379 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | ||| || | ||||| || ||||| || | ||||| || Sbjct 378 GTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTG 319 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || || ||||| ||||| ||||||| || | |||| ||| || || || Sbjct 318 GTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGA 259 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| ||||| || ||||| || || | || || || || |||||||| Sbjct 258 TGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 113 bits (124), Expect = 8e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||| ||||||| ||| | ||| | ||||| ||||| Sbjct 210 AATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATT 151 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | ||| || | || || |||||||| || | ||||| || Sbjct 150 GTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTG 91 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || ||||| ||||| ||||| | || | |||| ||| || || || Sbjct 90 GTCTGGAGGGATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGA 31 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACC 193333 | ||||||||| ||||| || ||||| || Sbjct 30 TGGCTCAACTTCAAGAGTGATGGTTTTGCC 1 >seq2744 Length=156805 Score = 129 bits (142), Expect = 1e-24 Identities = 172/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||||||||||| ||||||| ||| | ||| | ||||| || || Sbjct 156805 ATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTG 156746 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | | ||| || | || || || ||||| || | ||||| || Sbjct 156745 TAGTCAGAGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGG 156686 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||| ||||| ||||| | |||| |||| |||||| || ||| Sbjct 156685 TCTGGCGGGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAA 156626 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || || ||||| || |||||||| || || || || |||||||| || ||||| || Sbjct 156625 GGTTCTACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >SEQ37497 Length=345 Score = 104 bits (114), Expect = 4e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | || | ||| || | ||||| ||||||||||| | ||| Sbjct 339 ATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATGAGCCTC 280 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || || || ||||| ||||| ||||||| || | |||| ||| || Sbjct 279 TGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTG 220 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | ||||||||| ||||| || ||||| || || | || || || || |||||| Sbjct 219 TCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGC 160 Query 193359 AT 193360 || Sbjct 159 AT 158 Score = 93.3 bits (102), Expect = 8e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||||||||| ||||||| ||| | ||| | ||||| ||||| Sbjct 166 AATTTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATT 107 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || | || | | ||| || | || || |||||||| || | ||||| || Sbjct 106 GTAGTCAGAGAGTGTACGACCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTG 47 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT 193289 || || || || || ||||| ||||||||||||| || | |||| Sbjct 46 GTCTGGTGGGATACCCTCTTTGTCTTGTATTTTGGCCTTAACATTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898899151376880