Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 120 4e-22 SEQ58105 120 4e-22 seq2744 109 8e-19 seq2773 104 3e-17 >SEQ58356 Length=38410 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| ||||| | ||||| | || || ||||| || || | || || || | || Sbjct 35267 AATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCCTC 35208 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| ||| || ||| ||||| ||||||||||| || || || || || || Sbjct 35207 CGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGATCA 35148 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | ||| ||||| ||||| |||||| | | || ||||| || || || Sbjct 35147 GCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAA 35088 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGTAAAAT 156057 ||| || ||| | || | ||| | ||||| || |||||||| ||| ||||| Sbjct 35087 TATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGGTAAAAAAT 35032 >SEQ58105 Length=99015 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||||||| || || ||||| ||||| | || ||||||||||| || | Sbjct 16476 TTTCTTTGGAATCACGAATGTATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACAT 16417 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 ||||||| ||||| || || | ||| || |||| ||||| | | ||||| ||| Sbjct 16416 TTTCCATGGCTATTTGGAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTG 16357 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 |||||| || || | ||| ||||| || || || |||| | || |||||||| | || Sbjct 16356 AAAATCGCTCCACTAGATTTTCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAA 16297 Query 18591 CATATTTAATGAAATGTTTTTCATTATCCTT 18621 | | ||||||||||||| | ||| |||||| Sbjct 16296 CGTGTTTAATGAAATGTCTCTCACAATCCTT 16266 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 17863 TTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 ||| | |||||| || ||||| ||||| |||||||| ||||||||||| || || || | Sbjct 18267 TTTCTGGTATTCACCTACTTTCTTCTCAAAGAAATTGGTCTTTCCTTCTAAAGAGATGAG 18208 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAAT 17957 |||||||| ||||||||||| | || || |||| Sbjct 18207 GTTCATAAAGTCAAATGGATTCTTTGTGTTGTAAT 18173 >seq2744 Length=156805 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || ||| | ||||| ||||||||||| |||| || ||| | Sbjct 156567 AACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCT 156626 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || |||||| ||||| ||||| || || || ||||| Sbjct 156627 TCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGAC 156686 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || | || | ||| ||||||||||| |||||| | || | || || || Sbjct 156687 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTAC 156746 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||||| | || || ||||| || | ||||| ||||| || Sbjct 156747 AACATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 156796 >seq2773 Length=85211 Score = 104 bits (114), Expect = 3e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| | || || || || ||||| |||||||| || || Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| || ||||| ||||| ||||||||||| ||||| || || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| | | |||| ||| || ||||| || |||||| Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGAT 66549 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| |||||| | || ||| | ||||||||||| || || || || || || Sbjct 66163 AAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCA 66222 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| |||||| || || |||||||| || ||||| || Sbjct 66223 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGAT 66282 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | | || | || || || ||||| |||||| | || | || ||||| Sbjct 66283 CAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTAC 66342 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || ||| || | |||||||| || || ||| | ||| |||| || Sbjct 66343 AACAT-TCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGG 66392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731257602604400