Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2773 156 8e-33 SEQ58356 140 6e-28 seq2744 132 9e-26 SEQ58105 127 4e-24 seq5513 98.7 2e-15 >seq2773 Length=85211 Score = 156 bits (172), Expect = 8e-33 Identities = 178/238 (75%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 192300 TTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATT 192359 |||||| | || |||| |||||||||||||| || ||||| | ||||| || || Sbjct 67540 TTTAAT--TGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTT 67483 Query 192360 ATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTG 192419 || ||||||| ||||| |||| |||| |||||| ||||||||||| | || |||||| Sbjct 67482 GTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTG 67423 Query 192420 ATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGA 192479 || || || || ||||| || || || ||||| ||| ||||| || | |||||| Sbjct 67422 GTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGA 67363 Query 192480 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | ||||||||| | ||||||||| || ||||| | || || | ||| ||||||||| Sbjct 67362 AGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | ||| | || | ||| | |||||| ||||| || ||| Sbjct 67307 ATTCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCA 67248 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| |||| ||| || ||||||||||| | || |||||| || || Sbjct 67247 GACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGA 67188 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || ||||| ||| ||||| || | || || | ||| Sbjct 67187 GGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCA 67128 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||||||| || || |||| |||||| | ||| || ||||| Sbjct 67127 ACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 129 bits (142), Expect = 1e-24 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 192307 ATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 || ||||||| |||| |||||||| || || | |||| || ||| || || || |||| Sbjct 66851 ATTCCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGA-ATGTTGTAAT 66794 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 |||| | ||| || |||| || | |||||| ||||||||||| | || |||||| || | Sbjct 66793 CAGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTG 66734 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || || ||||| || || || ||||| ||| ||||| || | |||||| | || Sbjct 66733 GAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTT 66674 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||||| | |||||| || || || || | |||||| | ||| || ||||| Sbjct 66673 CAACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 125 bits (138), Expect = 1e-23 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 192307 ATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAAT 192364 || ||||||| |||| |||||||| || || | |||| || ||| || || || |||| Sbjct 66395 ATTCCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGA-ATGTTGTAAT 66338 Query 192365 CAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAG 192424 |||| | ||| || |||| || | ||||| || || ||||| | | ||| ||||| | Sbjct 66337 CAGACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGG 66278 Query 192425 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 | || || |||||||| || || |||||| ||||||||| || | ||| || | | Sbjct 66277 GAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCT 66218 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || | || |||||||| ||||| | ||| || | ||||||||||||||| Sbjct 66217 CAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTT 66163 Score = 123 bits (136), Expect = 5e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | || | ||| | |||||| || || || ||| Sbjct 67079 ATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCA 67020 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| |||| ||| || ||||||||||| | || |||||| || || Sbjct 67019 GAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGA 66960 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| ||||| || | |||||| | ||| Sbjct 66959 GGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCA 66900 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||||||||| || ||||| | || || | ||| || |||||| Sbjct 66899 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 >SEQ58356 Length=38410 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 |||| ||||| | | || || | ||| || |||| ||| || ||||| || || | Sbjct 35038 TACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGG 35097 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 ||||||| || |||| |||| ||||||||||||||||| || | || ||||| |||| Sbjct 35098 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 35157 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || || ||||||||||| ||||| ||||||||| |||| ||| || | || | Sbjct 35158 GAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCA 35217 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || |||||||| || || | ||||| | |||||||||||| Sbjct 35218 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq2744 Length=156805 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | ||| ||||| | || | ||||| ||| || || ||| Sbjct 156799 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCA 156740 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| || | || |||||||||||||| | ||||| || || || Sbjct 156739 GAGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 156680 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| |||||||| |||| ||||| | |||| Sbjct 156679 GGGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 156620 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| ||||| ||||| | ||| || | ||| |||||||| || Sbjct 156619 ACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >SEQ58105 Length=99015 Score = 127 bits (140), Expect = 4e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||||| || ||||||||||| || ||| |||||| |||||||| || ||| || Sbjct 16447 ATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAACCCATAGAAG 16388 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACA 50225 ||| || || | | ||||| || | ||||| || |||| ||| ||| ||| Sbjct 16387 AATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTTTCATTGACA 16328 Query 50226 ATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCT 50285 || ||||||||||| || || ||||||| ||||| |||||| |||||| | ||| ||| Sbjct 16327 ATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATGTCTCTCACAATCC 16268 Query 50286 TTTAAATTTTCCCAA 50300 |||||| |||||||| Sbjct 16267 TTTAAACTTTCCCAA 16253 >seq5513 Length=124375 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 125551 AGAAAAGGACAATCTGATGCCCATTTTTTATGATCTTCGCCTGGATCGTCGCCTTCTTTC 125610 || || ||||| | | |||||| ||| ||| ||| | | |||||||||||||| | Sbjct 10988 AGGAACGGACATTGAGGTGCCCACCTTTGATGGTCTACAGCAGGATCGTCGCCTTCCACC 11047 Query 125611 CATTGCATTATTTCTACTTTGCAGAAAGCGCATCTTACTTCGTCACCTCTTTGAAGATAA 125670 ||| ||| ||||| ||||||||||||||||| | ||||| || || | ||||| Sbjct 11048 CATCTCATGATTTCGACTTTGCAGAAAGCGCAGCGCACTTCATCGCCCCGACCTAGATAG 11107 Query 125671 TAGAAACCATTTTTAGCCAACGTTTCAGGCGAAAGAAACGTTAATGGCCAATTAGTAAAT 125730 ||||| || |||||||| || |||||| | | ||| | | ||||| ||| || Sbjct 11108 TAGAATCCGTTTTTAGCTAAGCGTTCAGGTGTGATAAATGAAACAGGCCACTTATCGAAA 11167 Query 125731 GTTTTTATTCGTTC 125744 ||||| | ||| || Sbjct 11168 GTTTTGAGTCGCTC 11181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983632879879650