Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2773 141 2e-28 SEQ58356 131 3e-25 seq2744 114 2e-20 SEQ58105 111 3e-19 seq5513 102 1e-16 >seq2773 Length=85211 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || |||| || ||||||||||| || ||||| | ||||| ||| || || || ||| Sbjct 67532 CCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAT 67473 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || |||| |||||| |||||||| || | || ||||||||| || || Sbjct 67472 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 67413 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || || || ||||| ||| ||||| || |||||||| | ||||||| Sbjct 67412 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACT 67353 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||||||||| || ||||| | || || | || ||||||||| Sbjct 67352 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 120 bits (132), Expect = 5e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || | || | ||||| |||||| ||| || || || Sbjct 66623 ATACCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCA 66564 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || |||| ||| || ||||||||||| | | || ||||| || Sbjct 66563 GACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGA 66504 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||||| || ||||||||||| | ||| Sbjct 66503 GGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT 66444 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| ||||| || ||||| || | ||||||| || || |||||| Sbjct 66443 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 100 bits (110), Expect = 5e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171840 ATACCACCTC-TAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 || ||||||| |||| |||||||| || || | |||| || || ||| || ||||| Sbjct 66395 ATTCCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATC 66337 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | | || | || || | ||||| || || || || | | ||| || || || Sbjct 66336 AGACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGG 66277 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || |||||||| || || |||||| ||||||||| || ||||| || | || Sbjct 66276 AGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTC 66217 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || | || |||||||| ||||| | ||| || | |||||||||||||| Sbjct 66216 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTT 66163 >SEQ58356 Length=38410 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| ||||| | | || || | ||| || |||| ||| || |||||| || || | Sbjct 35038 TACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGG 35097 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||| | || | || |||| |||||||||||||| || || | || || || |||| Sbjct 35098 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 35157 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || || ||||||||||| ||||| ||||||||| |||||||| || | || | Sbjct 35158 GAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCA 35217 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 | || || || |||||||| || || | ||||| | ||||||||||||| Sbjct 35218 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq2744 Length=156805 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | || | ||| ||||| | || | ||||| || || || || Sbjct 156799 ATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCA 156740 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | || ||||||||||| || | ||||| ||||| || Sbjct 156739 GAGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGC 156680 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| |||||||| ||||| ||||| | |||| Sbjct 156679 GGGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCT 156620 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| ||||| ||||| | ||| || | || |||||||| || Sbjct 156619 ACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >SEQ58105 Length=99015 Score = 111 bits (122), Expect = 3e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 || ||||||||||| || ||| |||||| |||||||| || ||| || || || Sbjct 16438 GAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAACCCATAGAAGAATCTGGCC 16379 Query 39477 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 || | | ||||| || | ||||| || |||| ||| ||| ||||| |||||| Sbjct 16378 TCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTTTCATTGACAATTCCATCA 16319 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 ||||| || || ||||||| ||| | |||||| |||||| | ||| ||| |||||| || Sbjct 16318 GATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATGTCTCTCACAATCCTTTAAACTT 16259 Query 39597 TCCCAA 39602 |||||| Sbjct 16258 TCCCAA 16253 >seq5513 Length=124375 Score = 102 bits (112), Expect = 1e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 104974 AGAAAAGGACATTTTGATGCCCATTTTTTATGATCTTCGCCTGGATCGTCGCCTTCTTTC 105033 || || ||||||| | |||||| ||| ||| ||| | | |||||||||||||| | Sbjct 10988 AGGAACGGACATTGAGGTGCCCACCTTTGATGGTCTACAGCAGGATCGTCGCCTTCCACC 11047 Query 105034 CATTGCATTATTTCTACTTTGCAGAAAGCGCATCTTACTTCGTCACCTCTTTGAAGATAA 105093 ||| ||| ||||| ||||||||||||||||| | ||||| || || | ||||| Sbjct 11048 CATCTCATGATTTCGACTTTGCAGAAAGCGCAGCGCACTTCATCGCCCCGACCTAGATAG 11107 Query 105094 TAGAAACCATTTTTTGCCAACGTTTCAGGTGAAAGAAACGTCAATGGCCAATTAGTAAAT 105153 ||||| || ||||| || || |||||||| | ||| | | ||||| ||| || Sbjct 11108 TAGAATCCGTTTTTAGCTAAGCGTTCAGGTGTGATAAATGAAACAGGCCACTTATCGAAA 11167 Query 105154 GTTTTTATTCGTTC 105167 ||||| | ||| || Sbjct 11168 GTTTTGAGTCGCTC 11181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904376149642200