Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3547 147 6e-30 SEQ17521 116 1e-20 seq49 89.7 2e-12 SEQ58105 84.2 6e-11 >seq3547 Length=120467 Score = 147 bits (162), Expect = 6e-30 Identities = 319/473 (67%), Gaps = 12/473 (3%) Strand=Plus/Minus Query 288874 AATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTT 288933 |||||| || || ||||| ||||||||||||| || |||||||||| | ||| Sbjct 67100 AATGCTTTATCCAAAATATCAACTCTGTTTGTTGCAGCTAATACAACAACATTGGTGGTG 67041 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 ||||| |||||||| || || |||||| | ||| | ||| ||| | Sbjct 67040 GTATTAAAACCATCCATTTCAACTAGAAGTTGATTCAATGTGTTTTCTTGTTC------T 66987 Query 288994 GAAC-CTCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCA 289050 ||| | || || || || | ||| |||| ||||||||||||| ||||| ||| Sbjct 66986 GAATGCCCTCCAAAGCTACG--TC-CACCTCTTTTCCTACCAACAGCATCGATTTCATCA 66930 Query 289051 ATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 ||||||| | || || | || || ||| || || | ||| | ||||| || | || Sbjct 66929 ATGAAAAGGATGCATGGTGCATGTTTTCTAGCCATAGAAAACATATCTCTCACTCTTGAA 66870 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 | || | ||| ||| ||||||||| |||||| ||| | || ||| | |||| |||| Sbjct 66869 GGACCTACACCTACAAACATTTCTAAAAATTCCGAACCTGACACTGTTAGAAATGGTACA 66810 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 |||||||| |||||| ||| | ||||| | || ||||| || ||||| || || Sbjct 66809 TTTGCTTCTCCTGCTGTAGCCTTAGCCAGTAAGGTTTTACCAGTACCAGGAGGCCCAGTC 66750 Query 289231 AATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAA 289290 |||| | |||| || |||| |||||||| | |||| | | || | || || Sbjct 66749 AATAAAGCTCCTTTAGGTATCTTTGCCCCTAAATCAATATACTGTTGTGGATTTTTCAAG 66690 Query 289291 AATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 || | ||||| ||| | |||| |||||| || ||||| || || ||||| Sbjct 66689 AAGTTTACAAACTCCATTATTTCAATTTTTGCTTCTTCACAACCAGCAACATC 66637 >SEQ17521 Length=26855 Score = 116 bits (128), Expect = 1e-20 Identities = 614/966 (64%), Gaps = 22/966 (2%) Strand=Plus/Minus Query 155406 TCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTC 155465 || |||||||| || ||||||||||| | ||| | ||| | |||| | | | | Sbjct 3269 TCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTGGAGTTTTTAG-C 3211 Query 155466 TTCTTGTT-TGGGTAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATAC 155521 |||| | ||| ||| |||| ||||| ||||| ||||||| ||| || | | | Sbjct 3210 TTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTTGGGTTATAATT-- 3153 Query 155522 CTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATACC 155581 || || || ||| ||| || || | | | ||| |||| ||||||||||||||| Sbjct 3152 -TTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATTTACAAACATATT 3094 Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 | | ||||||| || | ||||||||| || || | | |||||||||| || Sbjct 3093 CAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTGTATTCTACTAT 3034 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 || || || ||| || || || || |||| ||| ||||| ||| || ||||| Sbjct 3033 TTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTACTCTTTCTGTT 2974 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAAT--C 155759 ||| | ||| ||||||| ||| |||| || ||||| || | ||||| || | ||| | Sbjct 2973 ACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTTCTACAATAGC 2914 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATA--TT 155817 || ||| | | | || || | ||| || |||| ||| |||||| || Sbjct 2913 CTT--CCATAAAACTTGTGCTTTTACTTGTTTAACAAATCTTTTTTCATTCTCATACTTT 2856 Query 155818 TCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGG 155877 ||||| | || ||| | || || || ||||||| || ||||| || | || || Sbjct 2855 TCATAAAGGGC-TTC-AAACTCTTCTCCCCAACAATCTGCCAAACCAGGACAGTCATGGG 2798 Query 155878 GGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCC 155937 | || | || |||| ||| ||| || | | |||||| | ||| || Sbjct 2797 GACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATCTGGTATCC 2738 Query 155938 AAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGATTCTTCCGTAGC 155996 | | |||||| || | ||||| | || || || || | || |||||| || Sbjct 2737 ATAAAGCATAAAACAATTCCCTAG-CTCGAACTTCTTCTTTACCAGTATTCTTTTTCAGA 2679 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC---A 156053 ||||| || || | ||| | ||| ||| || | ||| | |||||| || | Sbjct 2678 TCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAATGCCCCTGGA 2619 Query 156054 TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | | || ||||| ||||||||||| | || || | || | || | || ||| || Sbjct 2618 CGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAACATTGGG 2559 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | || ||||| || ||||| || || ||| | ||| | || | | Sbjct 2558 ACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGCTCGGATACAG 2499 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 |||| ||| || ||||| ||||||| ||||||| || || |||| || | ||| Sbjct 2498 TGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTTTCAGAGTG 2439 Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGA 156293 | | || || |||||| ||||||| ||| | | || | || || |||||| Sbjct 2438 TCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATGACAATTGA 2379 Query 156294 GGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGAC 156353 |||| ||| || |||| |||| ||||| | || ||| | |||||||| | |||| Sbjct 2378 GGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAATACTTCTCAGAC 2319 Query 156354 ATATAA 156359 | |||| Sbjct 2318 A-ATAA 2314 >seq49 Length=523143 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || |||||||| || |||||||| |||||||||||||| || ||| | || || ||| Sbjct 388836 ATTGTCATACGGGATGGGATAGCATGTGGATTGATGATGATATCCGGTGTGAGCCCTTCA 388777 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAAT-GTTTCCAATAGTTCCCTTTTGTCCGTG 251963 || |||||||| | ||| | || || | | | ||| |||||| |||||||| || Sbjct 388776 CATGTAAAGGGCATGT-CTTCTTGTCTGTACTGGATACCACAAGTTCCTTTTTGTCCATG 388718 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 | || || || |||||||| |||| ||| || || | |||| ||||| Sbjct 388717 CCTTGAGGCAAATTTGTCACCAATTTGAGGAATGCGTACTGATCGGACTCGAATTTTACA 388658 Query 252024 GAAGTTGTAACCATCACCGTT 252044 ||| |||||||| |||| ||| Sbjct 388657 GAATTTGTAACCTTCACTGTT 388637 >SEQ58105 Length=99015 Score = 84.2 bits (92), Expect = 6e-11 Identities = 144/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 133436 TTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATC-CAGGACAAGCGTGC 133494 || |||||| |||||||||| | |||||||| | ||||||| || | || | ||| Sbjct 17118 TTGCCTTGTGTTAAAAAGAAGGCAGACTGGGCCCTACAATGGATTGCAAGCAAAAC-TGC 17176 Query 133495 GAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGC 133554 | |||| ||| | || || ||||| | |||||||| ||||||||| || Sbjct 17177 AACATTTGGAGAACGTATTGTAGCATTTGCAGCGGTAGAGGGTATTTTTTTCTCAGGCA- 17235 Query 133555 GTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTA 133613 ||| |||| |||| |||||| | || |||||||| | | ||||| || ||| || Sbjct 17236 GTTTTGCTTCTATCTTTTGGTTAAAGAAGCGTGGACTCATGCCTGGTTTGACTTTCAGTA 17295 Query 133614 ACGAACTTATTTCAAGGGACGAGG 133637 | || ||||||||||| || |||| Sbjct 17296 ATGAGCTTATTTCAAGAGATGAGG 17319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470551138210583