Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value SEQ55136 109 7e-18 SEQ12152 87.8 2e-11 >SEQ55136 Length=707 Score = 109 bits (120), Expect = 7e-18 Identities = 146/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| | ||| ||| | || | ||||| ||||| | ||| | | | ||||| Sbjct 230 TGGCCAGCTAACCGAGCAACAGCATTCTCACGGAAGTCTGCACCTCCCTGGAGGTGATCG 289 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATG 1254464 || || ||||| | ||||| ||||| ||||| | |||| || |||| ||| Sbjct 290 TGGAACGTTTGTTGTAATGCGCGAGACGCGACGCCTCAGCCGCGATACG--CGATATATG 347 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||| || ||||||||||||| ||||| | |||| ||||||| ||| ||| |||| | Sbjct 348 TCGTTCACGAACGAGTTCATGATGGACATAGTCTTGCTGGAGATTCCCGTGTCCGGGTAC 407 Query 1254525 ACCTGCTTGAGCACCTTGTAG 1254545 ||||||||||| || |||||| Sbjct 408 ACCTGCTTGAGAACTTTGTAG 428 >SEQ12152 Length=30516 Score = 87.8 bits (96), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | || | ||||| ||||| | ||| | | | ||||| Sbjct 12800 TGGCCAGCTCACCGGGCAACAGCAATCTCACGGAAGTCTGCACCTCCCTGGAGGTGATCG 12859 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATG 1254464 || || ||||| | ||||| ||||| | ||| | |||| || |||| ||| Sbjct 12860 TGGAACGTTTGTTGTAATGCGCGAGACGCGACGTCTCAGCCGCGATACG--CGATATATG 12917 Query 1254465 TCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGC 1254524 ||||| || |||||||||||| | || ||| ||||||| ||| ||| |||||| Sbjct 12918 TCGTTCACGAACGAGTTCATGG------TGGAGTTGCTGGAGATTCCCGTGTCCGGGTGC 12971 Query 1254525 ACCTGCTTGAGCACCTTGTAG 1254545 ||||||||||| || || ||| Sbjct 12972 ACCTGCTTGAGAACTTTATAG 12992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101627817954403