Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value SEQ38410 114 2e-19 SEQ38409 114 2e-19 SEQ55136 113 7e-19 SEQ12152 96.9 5e-14 >SEQ38410 Length=435 Score = 114 bits (126), Expect = 2e-19 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||| | |||||||| ||| ||| Sbjct 196 TGTACTTGGTGACGGCCTTGGTGCCCTCACTGACGGCGTGCTTCGCCAGTTCACCGGGCA 137 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||| | ||||| | ||| | | ||||| ||||||| |||| Sbjct 136 ACAGAAGCCTCACCGAAGTCTGCACCTCCCTCGAAGTAATCGTCGACCGCTTGTTGTAGT 77 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||| | | ||||||| |||| |||||||| || || ||||| Sbjct 76 GGGCG--AGACGAGACGCCTCCGCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTT 19 Query 1485648 CATGATCGACATCG 1485661 |||||| ||||||| Sbjct 18 CATGATGGACATCG 5 >SEQ38409 Length=247 Score = 114 bits (126), Expect = 2e-19 Identities = 143/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||| | ||||| || ||| ||| Sbjct 196 TGTACTTGGTGACGGCCTTGGTGCCCTCACTGACGGCGTGCTTCGCCAGCTCACCGGGCA 137 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGT 1485587 | || | ||| | ||||| | ||| | | ||||| ||||||| |||| Sbjct 136 ACAGAAGCCTCACCGAAGTCTGCACCTCCCTCGAAGTAATCGTCGACCGCTTGTTGTAGT 77 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || ||||||| | ||||||| |||| |||||||| || || ||||| Sbjct 76 GGGCG--AGACGAGACGCCTCGGCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTT 19 Query 1485648 CATGATCGACATCG 1485661 |||||| ||||||| Sbjct 18 CATGATGGACATCG 5 >SEQ55136 Length=707 Score = 113 bits (124), Expect = 7e-19 Identities = 174/244 (71%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || | || ||||| || || || ||||| ||||||| | ||| ||| Sbjct 188 TGTATTTAGTAATAGCTTTGGTGCCTTCGCTCACCGCGTGTTTGGCCAGCTAACCGAGCA 247 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| ||||| | ||| | || | ||||||| || ||||| | | Sbjct 248 ACAGCATTCTCACGGAAGTCTGCACCTCCCTGGAGGTGATCGTGGAACGTTTGTTGTAAT 307 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATGTCGTTGACAAACGAGT 1485646 ||||| | ||| | ||||| | |||| || |||| |||||||| || ||||||| Sbjct 308 GCGCGAGACGCGAC--GCCTCAGCCGCGATACG--CGATATATGTCGTTCACGAACGAGT 363 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||||| ||||| | ||| ||||||| ||| ||| |||| |||||||||||| || | Sbjct 364 TCATGATGGACATAGTCTTGCTGGAGATTCCCGTGTCCGGGTACACCTGCTTGAGAACTT 423 Query 1485707 TGTA 1485710 |||| Sbjct 424 TGTA 427 >SEQ12152 Length=30516 Score = 96.9 bits (106), Expect = 5e-14 Identities = 170/244 (70%), Gaps = 13/244 (5%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || || || || ||||| || || || ||||| ||||||| || ||| ||| Sbjct 12758 TGTATTTAGTAACAGCTTTGGTGCCTTCGCTCACCGCGTGTTTGGCCAGCTCACCGGGCA 12817 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| ||||| | ||| | || | ||||||| || ||||| | | Sbjct 12818 ACAGCAATCTCACGGAAGTCTGCACCTCCCTGGAGGTGATCGTGGAACGTTTGTTGTAAT 12877 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATC-ATGTCGTTGACAAACGAGT 1485646 ||||| | ||| | | ||| | |||| || |||| |||||||| || ||||||| Sbjct 12878 GCGCGAGACGCGAC--GTCTCAGCCGCGATACG--CGATATATGTCGTTCACGAACGAGT 12933 Query 1485647 TCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||||| | || ||| ||||||| ||| ||| ||||||||||||||||| || | Sbjct 12934 TCATGGTGGAG------TTGCTGGAGATTCCCGTGTCCGGGTGCACCTGCTTGAGAACTT 12987 Query 1485707 TGTA 1485710 | || Sbjct 12988 TATA 12991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909102390857801