Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 150 1e-31 seq2773 120 2e-22 SEQ58356 113 3e-20 seq2744 91.5 1e-13 >SEQ21942 Length=42535 Score = 150 bits (166), Expect = 1e-31 Identities = 337/501 (67%), Gaps = 4/501 (1%) Strand=Plus/Minus Query 6030 AGAATTGGCACCCTTTCCACCCGGAAACTCCCAGTCGATGTCCACTCCGTCAAAGAACTT 6089 || ||| ||||| |||||||| || |||||||| || ||||| || ||||| ||||| || Sbjct 35095 AGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTT 35036 Query 6090 CCAGGTCTCCAGAAACTCGCGGACGCTTGTGACGAACACCTCACGCTTAGAGTCATCGTT 6149 ||| || | || || || || || || || || | || | ||| | Sbjct 35035 CCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATC 34976 Query 6150 CATGAAATAAAACGGATCGCTCAACGTCCACCCCCCTATGGATGGTAGGACCGTCA-ACG 6208 | ||| || || ||||| ||| ||||| ||||| || ||||| || ||| ||| | Sbjct 34975 AAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATC 34916 Query 6209 AGGGGTTGTGACGTTTGATGGCCATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGT 6268 ||| | | |||| | | |||||| || |||||||| || ||||| |||||| Sbjct 34915 AGGTCTAGCTT-GTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCC 34857 Query 6269 ACGCCTCAACACCTTTCTGTGGTTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCT 6328 | | | ||| |||||||||||||| || || ||||| |||||| ||| || | Sbjct 34856 AGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTT 34797 Query 6329 TGAAGTCATCGCGACCAGCGCAGGATTTCTGTAGCGCCTC-AAAGGAATTGGGAATCTGC 6387 ||||||| || || || ||| ||| || | || | ||| | || | | Sbjct 34796 TGAAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATT-TCT 34738 Query 6388 TTGAGGGCGTCGTTTATGCCGCTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGC 6447 || | |||||| || ||| ||| ||||| || || || || ||||| || || || Sbjct 34737 TTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGT 34678 Query 6448 GTCAGATTAGGTATTGGTACCTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCC 6507 || ||||| || || |||||||| || | || || | ||| || || ||||||||| Sbjct 34677 GTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCC 34618 Query 6508 ACGAAATACGCACCGACGACT 6528 || ||||| || ||||||||| Sbjct 34617 ACAAAATAAGCTCCGACGACT 34597 >seq2773 Length=85211 Score = 120 bits (132), Expect = 2e-22 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||| || |||||||| ||||| || ||| | ||| |||| Sbjct 67061 AGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCT 67002 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||||||||| || ||||| ||||| || |||||| | || | || |||||||| Sbjct 67001 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 66942 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||| || || || || | || | || || || | || |||| Sbjct 66941 TGGATTTTGGCTTTAAC--ATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGG 66884 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || ||||| |||||||| ||||| Sbjct 66883 TCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 Score = 118 bits (130), Expect = 7e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || |||||||| ||||| |||||| | ||| |||| |||||||| ||||| || ||| Sbjct 67496 TCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAG 67437 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || ||||| || |||||| | || | || |||||||| | ||||| |||||| || Sbjct 67436 ATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGAC--AT 67379 Query 34907 GCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 || || | || | || || || | || ||||||||||| || || ||||| | Sbjct 67378 TCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGA 67319 Query 34965 CAAAGATCTGCAT 34977 ||||||||||||| Sbjct 67318 CAAAGATCTGCAT 67306 Score = 105 bits (116), Expect = 4e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || | || | ||| || ||||||| || ||| || ||||| || ||||| | Sbjct 67306 TTCCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAG 67247 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | ||| |||| |||||||||||||| || ||||| ||||| || |||||| | | Sbjct 67246 ACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAG 67187 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || ||||| || | ||||| |||||| || || || | || | || Sbjct 67186 GGATGCCTTCCTTATCCTGGATTTTGGCTTTGAC--ATTCTCAATTGTGTCCGAAGGTTC 67129 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | || |||||||| ||||| || || || ||||| || ||||| Sbjct 67128 AACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| || ||||||| || ||| || |||||||| ||||| || ||| | || |||| Sbjct 66606 CAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATC 66547 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||||||| || || || || || ||||||||||| | || | || || ||||| Sbjct 66546 TTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTC 66487 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | ||||| || ||| | | || | || | ||| || || | ||| || || Sbjct 66486 TTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGT 66427 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || ||||| || || |||||||| ||||| Sbjct 66426 CTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 >SEQ58356 Length=38410 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || ||||| || ||||||| || || || | || |||||||||||| || ||||| Sbjct 35037 TTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCG 35096 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 |||| |||| |||| ||||| || || || || ||||||| |||||||| || | Sbjct 35097 GATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGT 35156 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | ||||| || || | |||||| ||| || | | || | || |||||| Sbjct 35157 GGAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCC 35216 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| ||||| || ||||| ||||| || || || |||||||| Sbjct 35217 ACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq2744 Length=156805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| ||||| |||| || | ||| || || || ||||| ||||| || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || || ||||| || || ||||| || | ||||||||| |||| Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||| ||||| | ||||| || || | | || | || | || || Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| || || || || ||||| ||||||||||| ||||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325426220341421