Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 199 3e-46 seq5513 192 5e-44 SEQ58356 125 6e-24 seq2773 96.9 3e-15 seq2130 91.5 1e-13 >SEQ21942 Length=42535 Score = 199 bits (220), Expect = 3e-46 Identities = 576/884 (65%), Gaps = 13/884 (1%) Strand=Plus/Plus Query 29066 CGTCGCTGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGT 29125 ||||| || |||||||| || ||||| || || | || || || ||||| || || Sbjct 34600 CGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGT 34659 Query 29126 GCCGCTGCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGG 29185 || | || || || | ||||| | ||||| || || || || || ||||| ||||| Sbjct 34660 ACCCATTCCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGG 34719 Query 29186 GCTCAACGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAA 29245 | |||||| | ||| || || ||||| | || ||||||| ||||||| Sbjct 34720 AATTAACGACAGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAG 34779 Query 29246 GGGCCGTTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCA 29305 || || || |||||||| |||| ||||| || ||||| || |||||||||| || Sbjct 34780 CGGGCGAGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACA 34839 Query 29306 AAAGGGCGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGC 29365 ||||| |||| | |||||||| || |||||||| ||||| || || || ||| | Sbjct 34840 GAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTT 34899 Query 29366 CAAGCTGGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGA 29425 || | || | || | || || |||| || || ||||| |||||||||||| | || Sbjct 34900 AAAACAAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGA 34959 Query 29426 CCCGTTCTATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGA 29485 || ||||| ||| | | || || |||| | | ||||||| || || | ||| Sbjct 34960 TCCATTCTACTTCTTTGATGATAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTGAAAGA 35019 Query 29486 ATTTCTGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGG 29545 || || || ||||| || || ||||| || ||||| || |||||||| || ||||| Sbjct 35020 CTTCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGG 35079 Query 29546 CAAAGGCGCCAACCCGACACTTGGCAACGGGGAGC--GCGACGCCGACACGTATAACATT 29603 ||||| || || || | || | | ||| | |||| || ||| | Sbjct 35080 AAAAGGTGCTAATCCTAACCTCG-----GTGGACCAAATGACGGTGAAGTTTATGTCCAG 35134 Query 29604 TTACTAAAGGAATTGCGCGCAATGATGGACGAGTTACAATTGCAAACGGGCAAAACGTAC 29663 | | || || || || | |||| || ||||| || | | || || || | || Sbjct 35135 CTGATGAAAGAGTTACGTGAAATGCTGAACGAGCTATCCACGGAGACCGGTAAGAAATAT 35194 Query 29664 GAGTTGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATAC---GAC 29720 || ||||| ||| || ||| | || || ||||| |||||| | ||| | Sbjct 35195 GAACTGACATCCGCTATTAGTGCTGGTTGGGATAAGATCCAAGTAGTTGATTACAGGAAA 35254 Query 29721 GCTGCGCAAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGG 29780 ||| |||| | | | ||| | || || | ||||| ||||| |||||||| |||||| Sbjct 35255 GCTCAGCAA---TATATGGATCATATCTTTTTAATGAGTTACGACTTTAAAGGAGCGTGG 35311 Query 29781 TCAAACACCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAA 29840 ||||| | | | || | ||||| | | || || || ||||| ||||| ||| Sbjct 35312 TCAAATGACACTCTTGGACATCAAACACCGTTATATGCACCAGCATGGAATCCAAAAGAA 35371 Query 29841 CTGTACAACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAA 29900 |||| || ||| | ||||| ||| ||| || || |||| || Sbjct 35372 ACCTACACAACTGACTTTGGAGTTAAAAATCTCTTAGCCCAAGGAGTCAACCCTAAGAAG 35431 Query 29901 ATTATTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT 29944 ||||| || || || || |||||||| || |||||||| || || Sbjct 35432 ATTATAGTTGGTGTAGCGATGTACGGTCGTGGTTGGACTGGAGT 35475 >seq5513 Length=124375 Score = 192 bits (212), Expect = 5e-44 Identities = 365/530 (69%), Gaps = 12/530 (2%) Strand=Plus/Minus Query 103568 AACGGGTTCTTCTACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAG 103627 ||||| |||| ||| | || || ||||| |||||||||||||| || |||||||| || Sbjct 11118 AACGGATTCTACTATCTAGGTCGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAA 11059 Query 103628 ATTATGCGCTGGGAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAG 103687 || ||| | |||| ||| |||||||| || ||| || ||||| |||||||| || || Sbjct 11058 ATCATGAGATGGGTGGAAGGCGACGATCCTGCTGTAGACCATCAAAGGTGGGCACCTCAA 10999 Query 103688 TGTCCGTTCCTGaaaaaaaCGGCTGCTGGCGCGCTGCCCGCCGGCCTTGCG---ATG-GA 103743 ||||||||||| || | | | |||||| |||| | || | || || || Sbjct 10998 TGTCCGTTCCT-AAGACATCAA--GCTGGCAATGTGCC-GATGGAATCGCCTACATCTGA 10943 Query 103744 CGGGCAGGACGAGTGCGGCGTGAGCGCGCTGCCG--TCCACCAACGCCTGCGTGCGCATG 103801 ||| | ||||| || || || |||| | || | | | ||| | | || Sbjct 10942 CGGCCGTGACGAATGTGGAACAAGAGCGCCAACAACTCAAGCTGCACCTA--TCCATATA 10885 Query 103802 CCCGGCCCCGCGCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGAT 103861 || | ||||| ||||| || | || ||||| || | | | | || ||| ||| Sbjct 10884 CCACGACCCGCTCACCCCCGATATGCATCCGAAGCTGCCCGTCTCCGTACATTTGTCGAT 10825 Query 103862 TGGCCCCGGAGTCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACC 103921 ||||| || ||| || || || || ||| || | |||||||| || |||| |||||| Sbjct 10824 TGGCCTCGCAGTATGCGCCAAAAGCCTGAGGAGCTAGCCGAAGCTGGTTTCTTCTACACT 10765 Query 103922 GGCCACAGCGACAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCAC 103981 || || | ||||| ||||||||||||| ||| ||||||||| | ||||||||||| | Sbjct 10764 GGTCAAGGAGACAAAACGAAATGCTTCTTCTGTGACGGTGGTTTGAAGGATTGGGAAAAT 10705 Query 103982 GATGATGAGCCGTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTT 104041 || ||| || ||| | ||||| || | || || || || || ||||| | |||| Sbjct 10704 GACGATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCGATGTGCCTACGTCCAACTT 10645 Query 104042 GTCAAGGGCCACGATTATGTACAAAAGGTCGTGACCCAATCGTGTGTTGT 104091 ||||| || | || ||||| |||||||| | | || |||||| ||| Sbjct 10644 GTCAAAGGACGAGAGTATGTTCAAAAGGTTATATCGGAAGCGTGTGCTGT 10595 >SEQ58356 Length=38410 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| | || || |||||||| ||| |||| |||||| Sbjct 35267 AATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCCTC 35208 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||||| | | | |||||| ||| ||| |||||||| || | || |||||| Sbjct 35207 CGATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGATCA 35148 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||||||||| || | | ||| | | |||||||| Sbjct 35147 GCAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAA 35088 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAA 107788 ||||| ||||||||||| ||||| | |||||||| || |||| || || || Sbjct 35087 TATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGGTAAAAA 35034 >seq2773 Length=85211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| ||||| |||||| | ||||| || || |||||| | ||| ||| | Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | ||||| || || || ||||||||| | || ||| || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || |||| ||| || || || ||||| || | || || | |||||||| Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAA 66572 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| |||||||| | ||| | || || | ||||||| || Sbjct 66573 CATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTGCGAGGTGG 66620 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| || || | || || |||||||| ||| | || ||| | Sbjct 66163 AAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCCA 66222 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||||| | | | |||||| || ||| || |||||||| | || ||| Sbjct 66223 TCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGAT 66282 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | ||||| | || || |||||||| || || | ||| || | || ||| Sbjct 66283 CAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTAC 66342 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||||||||| |||||| | ||| |||| || | || ||||| |||| Sbjct 66343 AACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAA 66394 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| ||||| | |||||||| || ||||| | ||| || || Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || || || || |||||| | || || || Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | ||| || ||||| || || || | ||| || | || |||||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||| |||||| | ||| |||| || | || ||||| |||| Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAA 66850 >seq2130 Length=187805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 94241 TGGCCCATGCGATGAATACGGTCTTGCGCCTGCAGCTCGATCTGCGGGTTCCAGTGGGGC 94300 ||||||| ||| | || ||||| |||||||| |||||| |||||||||||||||||| Sbjct 86110 TGGCCCACGCGGTAGATGCGGTCCTGCGCCTGTTGCTCGAGCTGCGGGTTCCAGTGGGGG 86169 Query 94301 TCCAGCATAATAATGTGATTGCCGCCGGTTAGGTTTAACCCCACGCCGCC 94350 || |||| | | ||| ||| | ||| ||||| | |||||||||||| Sbjct 86170 TCGAGCACCAGCAGGTGGTTGGCCCCGCACAGGTTCAGCCCCACGCCGCC 86219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398550319214551