Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq49 86.0 8e-12 >seq49 Length=523143 Score = 86.0 bits (94), Expect = 8e-12 Identities = 119/163 (73%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 201560 TCAGATACGTATACCAGAAATTGGAGATAAATTTTGTTCT-GGAATGGCCCAAAAAGGAA 201618 |||| |||| || || ||||||| || |||||| || || |||| | ||||||||| Sbjct 388676 TCAG-TACGCATTCCTCAAATTGGTGACAAATTTGCCTCAAGGCATGGAC-AAAAAGGAA 388733 Query 201619 CTTGTGGTATGATTTATGCACAAGAAGATATGCCGTTTACACAATCGGGTATGACCCCGG 201678 |||||||||| || ||||||||| ||||| |||||| || | || |||| Sbjct 388734 CTTGTGGTATCCAGTACAGACAAGAAGACATGCCCTTTACATGTGAAGGGCTCACACCGG 388793 Query 201679 ATATTATAATCAATCCAAATTGTATACCATCAAGAATGACCAT 201721 |||| || ||||||||| || ||| ||||| | ||||| || Sbjct 388794 ATATCATCATCAATCCACATGCTATCCCATCCCGTATGACAAT 388836 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/98 (81%), Gaps = 6/98 (6%) Strand=Plus/Plus Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206 ||||| ||| | |||||||| ||| ||| |||||||| |||||||||||||||||||| Sbjct 388226 GGTATCAATTCTATTGTAGCTATTTTATGCTACACTGGTTACAATCAAGAAGATAGTGTC 388285 Query 201207 ATTCTTAATAAAGCAT---CTATTGAAAGAGGTTTATT 201241 | ||||| || |||| || | ||||||||||| || Sbjct 388286 A-TCTTA--AATGCATCGGCTGTGGAAAGAGGTTTTTT 388320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 654729900631000