Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 219 4e-52 seq2773 145 7e-30 SEQ17521 131 2e-25 SEQ58356 116 4e-21 seq4618 113 4e-20 seq2744 104 2e-17 SEQ58105 96.9 3e-15 >SEQ21942 Length=42535 Score = 219 bits (242), Expect = 4e-52 Identities = 352/502 (70%), Gaps = 4/502 (1%) Strand=Plus/Minus Query 19011 CCGACGTTGGGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCG 19070 |||| ||| || ||||| || || || || || |||||||||||||| || || || ||| Sbjct 35103 CCGAGGTTAGGATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCG 35044 Query 19071 AAGAATTTCCACGTTTCTAGATACTCTTGGACTGAATCGATAAA-CG-TCTGCCGTACGA 19128 ||||||||||| |||| || | |||| ||||| | | ||| || ||| | | | Sbjct 35043 AAGAATTTCCAAGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCT--CTTTTTA 34986 Query 19129 TCTTGTCGTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCA 19188 ||| || | | ||| ||||| || | | ||||||||||||||| || || || | Sbjct 34985 CCTTATCATCAAAGAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAA 34926 Query 19189 CTTTTAGATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACG 19248 | || |||| ||| | || ||| | ||| ||||| ||||||||||||||||| | Sbjct 34925 CCTTCAGATCAGGTCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAG 34866 Query 19249 GTTCGTTCCATGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAA 19308 |||||||||| | | | ||| || || ||||| |||| || |||||||| ||||| | Sbjct 34865 GTTCGTTCCAGGAGGACAAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGA 34806 Query 19309 TGGCCACTTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCG 19368 | | ||||||||||| | || ||| || || |||||||| |||| |||||| || Sbjct 34805 TAGAAACTTTGAAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTT 34746 Query 19369 GGACAGTTTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACA 19428 || ||| | || || || ||||| || || || ||||| | || ||||| | Sbjct 34745 CGATTTCTTTCAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAA 34686 Query 19429 ACAAATGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACAC 19488 | ||| | | ||||| |||| || ||||| || || || | || || || |||| Sbjct 34685 GAAGATGTGTAAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACAC 34626 Query 19489 CCCATTCGACAAAGTATGCACC 19510 |||| || ||||| || || || Sbjct 34625 CCCACTCCACAAAATAAGCTCC 34604 >seq2773 Length=85211 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||||||| || || || || |||| |||||||| ||||| ||||||||||| | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | | ||||| |||||||| |||||| |||| || || || || || ||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| ||||| ||| | | || | || |||| ||||| ||| Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | |||||||| |||| |||||| || || ||||||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCATA 66621 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||||||| || || || || |||| |||||||| ||||| ||||||||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | | ||||| || ||||| || || |||| ||||| |||||||||||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| |||||| ||||| | ||| | || || | || || || Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || | ||| || || ||||| ||||| Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | ||||| ||| | |||| ||||| |||||||| |||||||| || | Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| ||||| || |||||| | || || |||||||| || ||||| Sbjct 66560 AGGGTACGTCCA-TCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGG 66502 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||||| |||| | ||| | || |||| || ||||| Sbjct 66501 GATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTAC 66442 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | |||||| || || | ||||| || || |||||||| Sbjct 66441 TTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137181 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 137240 || ||||||||| | ||| || ||||| || | || ||||||||||| |||||||| || Sbjct 67536 ATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTC 67477 Query 137241 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 137300 | || | | ||||| |||||||| |||||| |||| || || || || || || Sbjct 67476 AGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGG 67417 Query 137301 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTC 137360 ||| |||||||| ||||| ||||| ||| | | || | || |||| ||||| Sbjct 67416 AGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTC 67357 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| | ||| | ||||| || || | || || || || || ||||| Sbjct 67356 TACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 >SEQ17521 Length=26855 Score = 131 bits (144), Expect = 2e-25 Identities = 477/741 (64%), Gaps = 7/741 (1%) Strand=Plus/Minus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACG 150779 |||| |||||||||||||| || || || || ||||| | | ||| ||| | Sbjct 3655 GGTTCACAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATG 3596 Query 150780 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 150839 ||||||| || || || ||| ||||| ||||| || | ||||| ||||| ||||| Sbjct 3595 GTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCA 3536 Query 150840 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGA-CCAGTCC 150898 |||| |||||||| | ||| | ||| ||| ||| | || || | | ||| ||| Sbjct 3535 GTAGCAGAGAATTACGAATTCCATGTTTAGCTAT-TTTTTCTTTAAGAGCAACCCAATCC 3477 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 || | ||| || | ||||||||| ||| ||||||| || |||| ||| | Sbjct 3476 CAGAGATCAGTGGGCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGA 3417 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCACT-AACAGATGCCAGTTCGTAACTGGCCTCGAG 151017 ||||| || | | |||||| ||| || || | ||| | || || || | Sbjct 3416 CTACCTTCATATGAACTATAA-ACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAA 3358 Query 151018 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 151077 || | | ||| | ||| ||| || |||| || || | | || || || | Sbjct 3357 AGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTC 3298 Query 151078 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGG 151137 || || ||||| || ||||| ||||| || |||||||| | || || || || || Sbjct 3297 ATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGG 3238 Query 151138 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAAT 151197 | ||| |||||||| || ||||| || | || || || ||||| ||| ||||| Sbjct 3237 TCTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAAT 3178 Query 151198 TTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG- 151256 |||||| | | | || | ||| || | || || ||||| | | Sbjct 3177 TTTATTTAGGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGT 3118 Query 151257 --TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTC 151314 |||||| ||| | | | |||| | ||||| || |||| ||||||||| || ||| Sbjct 3117 TCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTC 3058 Query 151315 GTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCA 151374 || | |||| ||||||||| | ||| | ||| || ||||| || ||| Sbjct 3057 ATCTACTGATGTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAG 2998 Query 151375 ATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGT 151434 ||| | ||||| || || | ||| || | || |||||||||||| | || ||||| || Sbjct 2997 ATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGT 2938 Query 151435 TTCGGCTTGAATTTCTATAAT 151455 ||| |||| ||||| ||| Sbjct 2937 TTCAACTTGTGCTTCTACAAT 2917 >SEQ58356 Length=38410 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | ||| || | ||| | |||||| || || || || ||||| ||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || |||||||||||| |||||| |||||||||||| || || Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || ||||| || ||||||| ||||| | ||| | || || | || || || Sbjct 35160 ATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACC 35219 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || | ||||| |||||||| ||||| Sbjct 35220 TCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq4618 Length=10119 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | || || ||||| | ||||||||||||||| || ||||| || Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || ||||| || ||| |||| || | ||||| || || || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| |||||| || | | ||| | ||||||| || || ||| Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || ||||| ||||| || || ||||| |||||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | ||| ||||||||||| || ||||| || | ||||| ||||| Sbjct 638 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 579 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || || || || ||| |||| || | ||||| || || || || || |||||||| | Sbjct 578 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGA 519 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| || | | ||| | ||||||| || || ||||||| ||| | || ||| Sbjct 518 ATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTTG 459 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || ||||| |||||||| Sbjct 458 CCAGTCAAGGTCTTGACGAAAATTTGCAT 430 >seq2744 Length=156805 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || | || || ||||| | ||| ||||||||||| |||||||| || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| | ||||| || || ||||||||| |||| || | ||||| || || || Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| |||||| |||| | ||| | ||||||| |||||||| Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| || | ||| ||||| || || ||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 >SEQ58105 Length=99015 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 50497 TCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGT 50556 ||||||| || || | ||| || | ||||| || || |||||| |||||||| | || Sbjct 17750 TCAAAGACGCTGTGGTCATAGAGCAGGAGTTCTTAACTGACGCTCTACCCGTGAGACTGC 17809 Query 50557 TGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGT 50616 | ||||||||| || |||||| || ||||||||||||||||| ||||||||| || Sbjct 17810 TAGGCATGAACTGTGAACTGATGTCAGATTACATTGAGTTTGTTGCTGACAGATTGCTGG 17869 Query 50617 TGCAGCTG 50624 | ||||| Sbjct 17870 TTGAGCTG 17877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488133873418800