Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2773 208 1e-48 seq2744 161 2e-34 seq4618 149 1e-30 SEQ58356 141 2e-28 seq3747 118 2e-21 SEQ37497 109 1e-18 >seq2773 Length=85211 Score = 208 bits (230), Expect = 1e-48 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||| | |||||||||| ||| |||||||| || || || || |||||| Sbjct 67532 CCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAT 67473 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || ||||| |||||||||||||||||||| |||| ||||| |||||||| Sbjct 67472 AGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 67413 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || || ||||| ||||| ||||| ||||| |||||||||| Sbjct 67412 ATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACT 67353 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| || || | ||||| ||||| ||||||||| Sbjct 67352 TCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || || | || ||||| || |||||||| || || || || |||||||| Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || |||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || || ||||| ||||| ||||| ||||| |||||| ||| Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACT 66669 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||||||||||| || || ||||| || ||||| Sbjct 66668 TCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||| ||||| | ||| ||||| || ||||| || || || || |||| Sbjct 67078 TACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAG 67019 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| || ||||| ||||| |||||||||||||| |||| ||||| ||||||| Sbjct 67018 AGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAG 66959 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || || || ||||| ||||| ||||| ||||| |||||| | Sbjct 66958 GGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66899 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||||| || ||||| || || | ||||| ||||| || |||||| Sbjct 66898 CTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || |||||| || | ||| ||||| || ||||| || ||||| || ||||| Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || ||| || ||||| ||||| |||||||||||||| |||| ||||| |||||||| Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || || || ||||| ||||| ||||| || || |||||| ||| Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACT 67125 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || |||||||| || | || || ||||| || ||||| Sbjct 67124 TCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || || | || ||||| || |||||||| || || || || |||||||| Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || || ||||| || | || ||||| ||||| Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || ||||| || ||||||||||||||||| ||||| || || || Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| ||||| || || || || | ||||| ||||||||||||||| || Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTTT 66162 >seq2744 Length=156805 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||| || || || || || |||||||| || || || || ||||| Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || ||||||||||| || || || || ||||| || Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || |||||||| || || |||||||||||||| || || ||||||||| Sbjct 156676 ATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACC 156617 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || ||||| || | ||||||||||| |||||||| Sbjct 156616 TCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 >seq4618 Length=10119 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||| || || || || ||||||||||| || ||||| || || || Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| || || || || ||||| || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || |||||||| || || || ||||||||||| || || || || ||| Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || ||||| ||||| ||||| || || || ||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||||||| | ||| || || || || || ||||||||||| ||||| || || || Sbjct 200 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAG 141 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || || || || |||||||| Sbjct 140 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 81 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| || || || || ||||||||||| || || || || ||| Sbjct 80 ATACCCTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 21 Query 82764 TCCAAAGTTATCGTCTTGCC 82783 || | ||| || || ||||| Sbjct 20 TCAAGAGTGATGGTTTTGCC 1 >SEQ58356 Length=38410 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | || || | |||| ||||| || ||||| ||||| || || | Sbjct 35038 TACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGG 35097 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || ||||| || ||||| ||||||||||| | | ||| ||||| || | Sbjct 35098 ATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTG 35157 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || ||||||||||| |||||||||||||||||||| ||||| | || | Sbjct 35158 GAATACCCTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCA 35217 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || | || || || || || || | || || || |||||||||||| || Sbjct 35218 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATTGTT 35270 >seq3747 Length=111519 Score = 118 bits (130), Expect = 2e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || || ||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || Sbjct 105186 CTCTGCTGATCTGGAGGGATTCCCTCCTTATCTTGAATCTTAGCTTTGACATTTTCGATT 105127 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 || ||| ||||| || || | ||| || |||||||| || | ||||| ||||| ||| Sbjct 105126 GTGTCAGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAAATC 105067 Query 82806 TGCAT 82810 ||||| Sbjct 105066 TGCAT 105062 >SEQ37497 Length=345 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || ||||| || || || || | | || ||||| || ||||| || ||||| || Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 || || || || ||||| || || || || || |||||||| || || || ||||||||| Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || || || ||||| | ||| || || ||||| ||||| ||||| || || Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 82803 ATCTGCAT 82810 || ||||| Sbjct 165 ATTTGCAT 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980982362546901