Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1406 91.5 3e-13 >seq1406 Length=443732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 |||||||||| ||| |||||| || ||||||||||| | | | ||| || || |||| Sbjct 39885 AAACACATGATGATCTTTGGAATTCAGCACAAATACAGTTAGTAAAAGAGGGGAAGATGC 39944 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127 || | ||| | || ||||||||| || || || | ||||||||| ||||| |||| Sbjct 39945 ATGGCTTTCTCCGGATGTACTGGTGCAAGAAAATCTTGGAATGGACACCCACTCCAGAAG 40004 Query 183128 ATGCTTTGAGTTATAGTATCTATATGAA 183155 ||||| ||| ||| || ||| |||| Sbjct 40005 ATGCTCTGAAATATGCAATATATTTGAA 40032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902652797590240