Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 179 4e-40 seq618 96.9 3e-15 seq4618 95.1 1e-14 seq2773 93.3 4e-14 seq2744 91.5 1e-13 >SEQ21942 Length=42535 Score = 179 bits (198), Expect = 4e-40 Identities = 336/490 (69%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 24800 GCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCG 24859 || || ||||| ||||||||||| ||||| | | || || || || ||||| ||| Sbjct 34607 GCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATT 34666 Query 24860 CCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAAC 24919 || || || | || | || ||||| ||| | |||||||| ||||| | || || ||| Sbjct 34667 CCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAAC 34726 Query 24920 GATGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCGC 24979 || | ||| | || || ||| | || |||||||||| ||| ||| || Sbjct 34727 GACAGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAGCGGGCGA 34786 Query 24980 GCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGGC 25039 | |||||||| || | |||||||| || ||||| || |||| ||||| ||||| || Sbjct 34787 GAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGT 34846 Query 25040 GTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGCGC 25099 ||||| | |||||||| || ||||| ||||||||||| || |||||| | | || | Sbjct 34847 TTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTAAAACAA 34906 Query 25100 GCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCGTTC 25159 || || | || || || || || || ||||| |||||||| || | || || ||| Sbjct 34907 GCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGATCCATTC 34966 Query 25160 TTCCACATGCACGACAAGGCGGCGCGCCAGA-CG-TTTATCGACTCGGTGCAAGAGTACC 25217 | | | | | || |||| | ||| || ||| | | || ||| |||| | || Sbjct 34967 TACTTCTTTGATGATAAGGTAAAAAG--AGATCGTTTTGTGGCATCAGTGAAAGACTTCC 35024 Query 25218 TCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAAGG 25277 || || ||||| ||||| ||||| || ||| | ||||||||||| || || || || | Sbjct 35025 TCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAG 35084 Query 25278 GCGCCAACCC 25287 | || || || Sbjct 35085 GTGCTAATCC 35094 >seq618 Length=235165 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/144 (76%), Gaps = 4/144 (3%) Strand=Plus/Minus Query 116473 CACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAA 116532 || || |||||| | || |||||||| |||| || ||||| ||||| || || || Sbjct 145497 CATGGGTTCCACATCCATGAGTTTGGAGACAACACAAACGGTTGCACGTCGGCGGGGCCG 145438 Query 116533 CACTTCAACCCCACCGGC--CAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCG 116590 |||||||| ||| |||| ||||| ||||| || || |||| |||| | ||||| | Sbjct 145437 CACTTCAATCCC--CGGCAACAGGAGCACGGTGCCCCTGACGCATCCGTCAGACACGTAG 145380 Query 116591 GTGACCTGGGCAACATTGAGGCCA 116614 | || ||||||||||||||||||| Sbjct 145379 GAGATCTGGGCAACATTGAGGCCA 145356 >seq4618 Length=10119 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| ||||| || |||||||| || | ||| | | | || || || Sbjct 635 AAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCA-TCTTCAAG 577 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||||| ||||||||| || ||||| || || ||||| ||| Sbjct 576 CTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTC-TTGAA 518 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | || | ||||| | ||||| || || | |||| ||||||| Sbjct 517 TTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTTGC 458 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || |||||||| ||||| Sbjct 457 CAGTCAAGGTCTTGACGAAAATTTGCAT 430 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| |||||||| |||||||| || | ||| | | | || || || Sbjct 179 AAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGGCCA-TCTTCAAG 121 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||||| ||||||||| |||||||| || || ||||| ||| Sbjct 120 CTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTTGTCTTGGAT 61 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || ||| | | |||| ||||| | ||||| || || | |||| ||||||||| Sbjct 60 TTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCC 1 >seq2773 Length=85211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || |||||||| || |||||||| || || || | || || || ||||| || Sbjct 67274 GTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCA 67215 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TT 133582 || | || || ||||| ||||| ||||||||||||||||| || ||| ||| || || Sbjct 67214 GCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGAT-TTTGGCTTT 67156 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | || || || || | || | ||| ||||| || || || Sbjct 67155 GACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGT 67096 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||| ||||| Sbjct 67095 TTTCACAAAAATTTGCAT 67078 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || |||||||| || || ||||| || || || | | | || || || |||||||| Sbjct 66590 GTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCA-TCTTCCAGTTGCTTGCC 66532 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||||||||| |||||||| |||||||||||||| ||||| ||| || ||| Sbjct 66531 AGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTT 66472 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | || || | ||||| || || | ||| | || || || || ||||| Sbjct 66471 TACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGT 66412 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 66411 TTTAACAAAGATTTGCAT 66394 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || || || || || || |||||||| || ||| ||| || || || || || | Sbjct 66818 GTAGATTCCTTTTGAATGTTGTAATCAGACA--GTGTACGCCCATCTTCTAGTTGTTTTC 66761 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| ||||| ||||| |||||||||||||||||||| ||| ||| ||| Sbjct 66760 CAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TTTGGCT 66702 Query 133582 TGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | | ||||| || || | || || || || | || | || ||||| ||||| Sbjct 66701 TTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCTGTCAGT 66642 Query 133641 GTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| ||||| Sbjct 66641 GTTTTCACAAAAATTTGCAT 66622 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 || || || || || || |||||||| || ||| ||| || || ||||| || | Sbjct 66362 GTAGATTCCTTTTGAATGTTGTAATCAGACA--GTGTACGCCCATCTTCAAGCTGTTTCC 66305 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | ||| | || || |||||||| ||||||||||| ||||| ||||| ||| ||| || Sbjct 66304 CTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTC-CTGAATTTTAGCT 66246 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| || || | ||||| || || | ||| | |||||| || || || Sbjct 66245 TTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTTTTTCCAGTGAGT 66186 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 66185 GTCTTCACAAATATCTGCAT 66166 >seq2744 Length=156805 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | ||||| ||||| || || ||||| || | ||| |||| || || | Sbjct 156775 AAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGA--GTGTACGACCATCTTCAA 156718 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || | || |||| ||||||||| || ||||| || || ||||| ||| Sbjct 156717 GCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTTGTCT-TGA 156659 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || || | | |||| ||||| | || || || || | ||| | |||||| Sbjct 156658 ATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAATAGTTTTG 156599 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| |||||||||||| Sbjct 156598 CCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483014974281160