Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 259 1e-63 SEQ10916 114 3e-20 >SEQ17521 Length=26855 Score = 259 bits (286), Expect = 1e-63 Identities = 532/785 (68%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 || ||||| ||| | | ||||| || |||||||| |||||| | || ||| | | | Sbjct 2239 CCACAACATATGCTAATGCGTGTAGCTATTGGTATACATGGAGAAGACATTGATTCAGCA 2298 Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTT 110489 ||| | || || |||| | | ||| | | ||| || | |||||| ||||| Sbjct 2299 ATTAACACCTACAATTTATTGTCTGAGAAGTATTTCACTCACGCCAGTCCTACTTTATTT 2358 Query 110490 AACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA-ATTAACGATGA 110548 || | ||| || |||||| | ||||| |||||| | || || || ||||| Sbjct 2359 TCTGCTGCTACTCCAAGACCTCAATTGTCATCTTG-TTTCTTATTGGCCATGAAAGATGA 2417 Query 110549 TTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGG 110608 |||||| || || ||||| |||| ||| || ||| | || |||||| | || Sbjct 2418 CAGTATTGAGGGAATATATGACACTCTGAAACAATGTGCCTTGATATCTAAATCTGCAGG 2477 Query 110609 AGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAA 110668 || ||||| |||| ||||| ||| || | ||||| || ||| || | || Sbjct 2478 TGGCATTGGGCTTCATGTTCACTGTATCCGAGCTAAAGGTACATGTATAGCTGGCACAAA 2537 Query 110669 GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGT 110728 |||| |||| ||||||||| |||||||||||||| | ||| ||| || | |||||| Sbjct 2538 TGGTGTATCAAATGGACTTGTCCCAATGTTAAGAGTATATAACAGCACAGCCAGATATGT 2597 Query 110729 GAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTC 110785 ||||||||||||| | | || |||||||| | ||| | ||||| |||||||| Sbjct 2598 AGATCAAGGTGGTAACAAGCGTCCAGGGGCATTTGCTGTATATTTAGAACCATGGCATTC 2657 Query 110786 AGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACG 110845 |||| | ||||| || ||||| || || ||| || |||||| |||| | Sbjct 2658 AGATGTGTTTGAGTTTTTAGATCTGAAAAAGAATACTGGTAAAGAAGAAGTTCGAGCTAG 2717 Query 110846 TGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 || || |||||||| | ||||| ||||||| || |||||| | ||| || |||||| Sbjct 2718 GGAATTGTTTTATGCTTTATGGATACCAGATTTGTTTATGAAAAGAGTTGAAAAAAATGA 2777 Query 110906 CATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGA 110965 | ||| | | |||||||| ||| | ||||||| | | ||| | ||| |||| Sbjct 2778 AAATTGGAGTTTGATGTGTCCCCATGACTGTCCTGGTTTGGCAGATTGTTGGGGAGAAGA 2837 Query 110966 GTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGC 111025 |||||||| |||||| ||||| ||||| || ||| | ||| |||||| | ||| Sbjct 2838 GTTTGAAGCCCTTTATGAAAAGTATGAGAATGAAAAAAGATTTGTTAAACAAGTAAAAGC 2897 Query 111026 TCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTT 111085 |||| | ||| || | ||| ||||||||||||| || ||||| | || || Sbjct 2898 ACAAGTTTTATGGAAGGCTATTGTAGAAGCACAAGTTGAAACAGGCACTCCATTCATGTT 2957 Query 111086 GTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTA 111144 || ||||| |||| ||| | || |||||| | ||| ||||||||||||| | || Sbjct 2958 ATACAAAGATTCAT-GTAACAGAAAGAGTAATCAGAAAAATCTAGGAACAATTAAATGTA 3016 Query 111145 GTAAT 111149 ||||| Sbjct 3017 GTAAT 3021 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| |||||| |||| || | ||||||||||||||||| || | |||||| Sbjct 3143 AAGTTACAAAAATTATAACCCAAAACCTAAATAAAATTATAGATGTCAATTATTATCCAG 3202 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 ||| | |||| ||| | || |||| ||||||||||| || ||||| || ||||| | Sbjct 3203 TTCCAGAAGCTAAAAACTCCAATATGCGACATAGACCAATAGGTATTGGAGTCCAAGGTT 3262 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAA 112755 ||||||||| ||| || ||||||| |||| ||| ||| || || |||| Sbjct 3263 TAGCTGATGCCTTTGTGCTGATGCGCTACCCTTATGAAAGTGAAAAAGCATTGTTGTTAA 3322 Query 112756 ATGAAAAGATTTTCGAAACAATCTATTTCGCTGCTATG 112793 | || |||| || || || ||||||| || ||| || Sbjct 3323 ACCAACAGATATTTGAGACTATCTATTACGGAGCTTTG 3360 >SEQ10916 Length=57671 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| |||| || |||||| ||| | ||||| || || || || |||| |||||| Sbjct 45789 GACACTTGAGAGATGATGATTTAGTTATATTCAACAGACAGCCTACATTGCACAAAATGA 45730 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 |||||||| ||| | ||| || || | || | | || |||||| | ||| ||||| Sbjct 45729 GTATGATGGGTCACAGAGTAAAGGTTCTTCCTTGGTCAACGTTTCGAATGAATTTAAGTT 45670 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | |||| ||||| || || ||||||||||||||||||||| | ||||| || |||| Sbjct 45669 GTACTTCGCCATATAACGCTGACTTTGATGGAGATGAAATGAATTTACATGTCCCACAAT 45610 Query 305487 CAAAGG 305492 ||| || Sbjct 45609 CAATGG 45604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185791577626799