Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2773 125 2e-23 >seq2773 Length=85211 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| || ||||| || || ||||| || || || || ||||| Sbjct 66409 AAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATCAGATACTATCGAAAAC 66468 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || ||||| |||||||| || |||||| ||| | || || || Sbjct 66469 GTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAGCAACGGCTCATTTTT 66528 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || || | || |||||| | || ||||||||| Sbjct 66529 GCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAACATTCAAAAAGAGTCT 66588 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||||||||||||| || | || ||| Sbjct 66589 ACTCTTCACCTTGTTCTGCGTCTGCGA 66615 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || ||||| || || ||||||||||| ||| ||| || Sbjct 66853 CAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCAGAT 66912 Query 206233 ACAGTCGA-ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || | |||||| ||| || || || || ||||| || || ||| || Sbjct 66913 ACAATTGAGAATGTTAAAGCCAAA-ATCCAGGACAAGGAAGGCATCCCTCCAGACCAACA 66971 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||||||||| || |||||||| |||||||||| | || | | || |||||| | Sbjct 66972 GCGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAACAT 67031 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || |||||||| ||||||||||||||| Sbjct 67032 TCAAAAAGAGTCCACTCTTCACCTTGTT 67059 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || || ||||||||||| ||| ||| |||||| | || Sbjct 67093 AAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCGGACACAATTGAGAAT 67152 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || || || || ||||| || || ||| || |||||||||| Sbjct 67153 GTCAAAGCCAAA-ATCCAGGATAAGGAAGGCATCCCTCCAGACCAACAGCGACTTATCTT 67211 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| |||||||||| | || || | || ||||| | || |||||||| Sbjct 67212 TGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAATATTCAAAAAGAGTC 67271 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||||| || | || ||| Sbjct 67272 GACTCTTCACCTTGTACTGCGTCTGCGA 67299 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||||||| || || ||||| |||||||| || || ||||| || || Sbjct 66163 AAAATG---CAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAG 66219 Query 206224 AGTTCTGACACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC 206282 || || ||| | ||| ||||| || ||| ||||| || |||||||| || || Sbjct 66220 CCATCGGATACAATTGAAAATGTAAAAGCTAAA-ATTCAGGACAAAGAAGGTATCCCTCC 66278 Query 206283 GGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGA 206342 || || | ||||||||||| || || ||| | |||||||| | || || | || Sbjct 66279 CGATCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGA 66338 Query 206343 TTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 ||||||| | || || || ||||| |||||| | || || Sbjct 66339 TTACAACATTCAAAAGGAATCTACGCTTCACTTGGTATT 66377 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| || | || |||||||||||||||||||||||| || | || ||||||| || || Sbjct 66615 TCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGT 66556 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || || || |||||||| || Sbjct 66555 ACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTG 66511 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| || | || |||||||||||||| |||||||| || | ||| ||||||| || || Sbjct 67299 TCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGACAGGGT 67240 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||| |||||||| || |||||||| || ||||| Sbjct 67239 TCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTG 67195 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 ||||| || ||||| || || || ||||||||||| ||| ||| || ||| | || | Sbjct 66637 AAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCAGATACAATTGAGAAT 66696 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||| || || || || ||||| || || ||| || |||| ||||| Sbjct 66697 GTTAAAGCCAAA-ATCCAGGACAAGGAAGGCATCCCTCCAGACCAACAGCGACTCATCTT 66755 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || | |||||||| | || || | ||||||||| | || || || || Sbjct 66756 TGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAACATTCAAAAGGAATC 66815 Query 206364 TACTCTTCACCTTGTTTT 206381 ||| |||||| | || || Sbjct 66816 TACGCTTCACTTGGTATT 66833 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||||||||| |||||||| || | || ||||||| | || | |||||||| Sbjct 67059 AACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCTTC 67000 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||| |||||||| || |||||||| || ||||| Sbjct 66999 CAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTG 66967 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || || ||||||||||| ||| ||| || Sbjct 67309 CAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTCAGAT 67368 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || || ||||| ||| || || || || ||||| || || ||| || Sbjct 67369 ACAATTGAGAATGTCAAAGCCAAA-ATCCAGGACAAGGAAGGCATCCCTCCAGACCAACA 67427 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| ||||| || ||||| || |||||||||| | || | | || |||||| | Sbjct 67428 GCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTACAACAT 67487 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 || ||||| || ||| | ||| | || || Sbjct 67488 TCAAAAAGAATCCACTTTGCACTTAGTATT 67517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180803873116439