Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 181 1e-40 SEQ58356 116 4e-21 seq2773 114 1e-20 seq2744 95.1 1e-14 >SEQ21942 Length=42535 Score = 181 bits (200), Expect = 1e-40 Identities = 374/554 (68%), Gaps = 12/554 (2%) Strand=Plus/Plus Query 24778 TTTCTCGAAAATAACAAGCGTTTCGAGAAACATCCCGATAAAATTGTAGCGGCTTACTTC 24837 ||||| || || ||||||| ||| | || | | | ||| | || | ||||| || Sbjct 34556 TTTCTAGAGAAAAACAAGCCTTTTAAACAAACTTCAGGGAAAGTCGTCGGAGCTTATTTT 34615 Query 24838 GTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTG 24897 || |||||||| || || | | | || | || || || || ||| || ||| | Sbjct 34616 GTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATTCCGAATCTT 34675 Query 24898 TCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTC 24957 | || | || |||| || | || || || ||||| || || || |||||| | | Sbjct 34676 ACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAACGACAGTTTG 34735 Query 24958 AAAACAGTTCCCGGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTT 25017 ||| | | || ||||| | || |||| || || ||| |||||| || || || Sbjct 34736 AAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAGCGGGCGAGAGGACTTC 34795 Query 25018 AAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACT 25077 || || | || |||||||| ||||| || | || ||||| ||||| || | ||| | Sbjct 34796 AAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGTTTGTCCTCC 34855 Query 25078 TGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCA 25137 |||||||| || ||||||||||||||||||||| | ||| | ||| ||||| || Sbjct 34856 TGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTAAAACAAGCTAGACCT 34915 Query 25138 CACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTCTTTCACATG 25197 | ||||||| || | || ||||| |||||||| ||| |||||||||||| || | Sbjct 34916 GATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGATCCATTCT---ACTTC 34972 Query 25198 CATGACGCGACCGT-----GCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTG 25251 ||| | | || | | | || || | | || || | ||||| ||| Sbjct 34973 TTTGATGATAAGGTAAAAAGAG---ATCGTTTTGTGGCATCAGTGAAAGACTTCCTCCAA 35029 Query 25252 ACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCC 25311 |||||||| || |||||||| || |||||||| |||||||| || || || ||||| || Sbjct 35030 ACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAGGTGCT 35089 Query 25312 AATCCTCACGTCGG 25325 |||||| || |||| Sbjct 35090 AATCCTAACCTCGG 35103 >SEQ58356 Length=38410 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||| ||||||||| | || || |||||| ||||||||||| | | Sbjct 35073 GACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCA 35132 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | ||| || ||||| || || || || |||||||| ||||||| ||| | Sbjct 35133 AAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTATCTTGAATTTTTGCTTTTACA 35192 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||||| | |||||| |||| || | ||||| || || || ||||| Sbjct 35193 TTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTC 35252 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 35253 ACGAATATCTGCAT 35266 >seq2773 Length=85211 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || ||||| || ||||| || | | || || |||||||||||||| || || ||| Sbjct 66386 CGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTA 66327 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| |||||| |||||||| || | |||| |||||||| ||||| ||||| || ||| Sbjct 66326 CGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCT 66267 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || |||||| ||| | | ||| | ||||| | ||||| || || | Sbjct 66266 TCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAG 66207 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||| || || || | || |||||||| Sbjct 66206 GTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||||||||| || |||||| |||||| || || || || | | Sbjct 66587 GACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCA 66528 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || || || || || ||||| ||||||||||| || ||||| || | Sbjct 66527 AAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACG 66468 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||| | ||||| ||||| | || | ||| ||||| || |||||||| Sbjct 66467 TTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTA 66408 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 66407 ACAAAGATTTGCAT 66394 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || ||||| || ||||| || | | || || |||||||||||||| || || ||| Sbjct 66842 CGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTA 66783 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| |||||| || ||||| || | | |||| || |||||||| |||||||| |||||| Sbjct 66782 CGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCT 66723 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || ||||| ||| | | || | ||||| | || || ||||| | Sbjct 66722 TCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAA 66663 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || || ||||| ||||| | ||||| ||||| Sbjct 66662 GTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||||||||| | ||| ||| |||||| || ||||| || | | Sbjct 67499 GATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCA 67440 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || |||||||| |||||||| |||||||| || || ||||| ||| | Sbjct 67439 AAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACA 67380 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || || ||||| | || | || || ||||| ||||| || Sbjct 67379 TTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTG 67320 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 67319 ACAAAGATCTGCAT 67306 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||||||||||||||| | ||| ||| |||||| || || || || | | Sbjct 67043 GACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCA 66984 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || |||||||| |||||||| |||||||| || || ||||| ||| | Sbjct 66983 AAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTAACA 66924 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || || ||||| | || | || || ||||| ||||| || Sbjct 66923 TTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTG 66864 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 66863 ACAAAGATTTGCAT 66850 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||||||||| |||||||| || ||| ||| |||||| || || || || | | Sbjct 67271 GACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCA 67212 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || |||||||| |||||||| |||||||| ||||| ||||| ||| | Sbjct 67211 AAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGATTTTGGCTTTGACA 67152 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | || || ||||| | || | || || || || || ||||| Sbjct 67151 TTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTC 67092 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 67091 ACAAAAATTTGCAT 67078 >seq2744 Length=156805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || |||||||| ||||||||||| | ||||| |||||| Sbjct 156778 ACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACCATCTTCA 156719 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||| | | |||| || | ||| || ||||| || || || ||||| || | Sbjct 156718 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTTGTCTTGA 156659 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| || | || || || || | || | ||||| Sbjct 156658 ATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAATAGTTTTG 156599 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || || |||| |||||||||||| Sbjct 156598 CCAGTGAGTGTCTTTACAAAAATCTGCATG 156569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476211090855240