Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 336 2e-87 SEQ58356 116 3e-21 seq4618 107 2e-18 seq2744 104 2e-17 seq2773 100 3e-16 SEQ37497 93.3 4e-14 >SEQ21942 Length=42535 Score = 336 bits (372), Expect = 2e-87 Identities = 787/1177 (67%), Gaps = 28/1177 (2%) Strand=Plus/Plus Query 59923 AAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCTAGAAATTTTCCTGTAGAT 59982 |||||||| | || |||||||| || ||||||||||| |||||||| || || |||||| Sbjct 34595 AAAGTCGTCGGAGCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGAT 34654 Query 59983 CGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTTATTCCGATATGCGGCGGC 60042 || |||| ||| ||||| | ||| |||| ||||||||||| || || || ||||| Sbjct 34655 AAGGTACCCATTCCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGT 34714 Query 60043 GACGGTATCAACGACAGTCTTAAAACCATAACCGGTAGTTTCGAAGCGCTTCAGCGATCG 60102 ||||| || ||||||||| | ||| || || |||||| |||| | || ||||| Sbjct 34715 GACGGAATTAACGACAGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCT 34774 Query 60103 TGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCCATGGGCCGCCGTCCAGAAA 60162 || || ||||| ||||| ||||| || || ||||| || ||||| || | || ||| Sbjct 34775 TGCAGCGGGCGAGAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAA 34834 Query 60163 CCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGGTAATTTCGGACAATTAATG 60222 || || || | || | ||||||||||| |||||||| || || |||||| | ||| Sbjct 34835 CCACAGAAGGGTTTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATG 34894 Query 60223 GCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTCGATCGGAGGTTGGACTCTA 60282 | |||| || | || | | || || | || || ||||| || ||||| | Sbjct 34895 TCTTTAAAACAAGCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTG 34954 Query 60283 TCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGAAAGATTTTTGTAGATTCTGTC 60342 | ||||| |||| | |||| | |||| || ||| || | |||||| | || || Sbjct 34955 GCAGATCCATTCTACTTCTTTGATGATAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTG 35014 Query 60343 GTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTCGACATCGACTGGGAGTTTCCC 60402 || || || || || |||||||| ||||||||||| ||||| || |||||||| || Sbjct 35015 AAAGACTTCCTCCAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCT 35074 Query 60403 GGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAACGCGATCGCGAAACGTACACC 60462 || ||||||||||| ||||| ||| | || | | | || || | ||| || | Sbjct 35075 GGTGGAAAAGGTGCTAATCCTAACCTCGGTG--GACCAA-ATGACGGTGAAGTTTATGTC 35131 Query 60463 ATTCTGTTGAAAGATTTACGCGAGGCGCTAGATCGA-TTAACCCTCGAAACGAATCGAAC 60521 ||| ||||||| ||||| || ||| || ||| || || || || | | Sbjct 35132 CAGCTGATGAAAGAGTTACGTGAAATGCT-GAACGAGCTATCCACGGAGACCGGTAAGAA 35190 Query 60522 GTACGAGTTGACCAGCGCAATTAGCGCCGGCGATGACAAAATCGCCGTCGTCGACTACAC 60581 || || |||| ||| ||||| || || || || ||| || || || |||| Sbjct 35191 ATATGAACTGACATCCGCTATTAGTGCTGGTTGGGATAAGATCCAAGTAGTTGATTACAG 35250 Query 60582 CGCTGCTCAAGAATATTTAGATTTAAtttttttGATGACGTACGATTTTAAAGGAGCCTG 60641 ||||| ||||| | ||| || ||||| |||| ||||| ||||||||||| || Sbjct 35251 GAAAGCTCAGCAATATATGGATCATATCTTTTTAATGAGTTACGACTTTAAAGGAGCGTG 35310 Query 60642 GTCGAATAACGATCTGGGCTATCAGACTACTCTATACGCTCCTTCGTTTAATCCTAAAGA 60701 ||| ||| || ||| || |||| || | |||| || || | | ||||| ||||| Sbjct 35311 GTCAAATGACACTCTTGGACATCAAACACCGTTATATGCACCAGCATGGAATCCAAAAGA 35370 Query 60702 ACATTATACTACCGATTTTGCCGTTCGTGCTCTACTCAAGCAAAAAGTCGAGAATaaaaa 60761 | || || || || |||| ||| ||| | ||| |||| | ||| || Sbjct 35371 AACCTACACAACTGACTTTGGAGTTAAAAATCTCTTAGCCCAAGGAGTCAACCCTAAGAA 35430 Query 60762 aaTTATTGTCGGCGTGGCCATGTACGGTCGCGGCTGGACCGGCGT---AAGCGATTTTGT 60818 ||||| || || || || ||||||||||| || ||||| || || || | | Sbjct 35431 GATTATAGTTGGTGTAGCGATGTACGGTCGTGGTTGGACTGGAGTCCAAAAC-------T 35483 Query 60819 TGAC-GATAATAATCCATTTTCCGGAACGGCCAAGGGACCGGTCAAAGGAACATGGGAAG 60877 || ||||||||||| || | ||| |||| || || ||||| || ||| | | Sbjct 35484 ACACAGATAATAATCCTTTCACTGGAGTAGCCACAGGTCCTTGTAAAGGGACGTGGCAGG 35543 Query 60878 ACGGAGTCGTCGACTATAGAGAGATTTTCAATAATTTCGTCGCCAATAACCCGATGGAA- 60936 | || || |||||||| ||||| ||| ||| | | | || || |||| | Sbjct 35544 ATGGTGTGGTCGACTACAGAGAAATTGCAAATGAAATTGCAGCAGGGAA----ATGGGAG 35599 Query 60937 ---TATTACGATTCCGTTGCAAAAGCGGCGTACGTCTTTAATAACTCGACCGGCGAGCTC 60993 |||| ||| || ||| ||||| | || ||||| | | || || || || Sbjct 35600 TTCCATTATGATAATGTGGCACAAGCGCCATATGTCTTCCGTCCTGCCACAGGGGATCTA 35659 Query 60994 ATCACTTACGACAATCCTCGGTCGGTTCTGGATAAAGCAAAATATGTATTGGACTA--TA 61051 || || ||||||||||| | || ||| | || |||| ||| ||||| | | | || | Sbjct 35660 ATTACATACGACAATCCAAGATCCGTTATAGAGAAAGGAAAGTATGT-TAGAAATAATAA 35718 Query 61052 GCTTGGGTGGTTTGTTCGCTTGGGAGATCGACGCCGA 61088 |||| || |||||||| || ||||| || || || || Sbjct 35719 GCTT-GGAGGTTTGTTTGCGTGGGAAATAGATGCAGA 35754 >SEQ58356 Length=38410 Score = 116 bits (128), Expect = 3e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || ||| | ||||| |||| || || ||| | Sbjct 35266 ATGCAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCCTCC 35207 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | |||||| ||||||| |||||||||||||| || || |||||| Sbjct 35206 GATACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGATCAG 35147 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | | || ||||| || ||||||| | | | ||| |||||| Sbjct 35146 CAACGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAAT 35087 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAAATGATCATT 25413 ||||| || || || || | ||| | ||||| || || |||||||| ||| ||| || Sbjct 35086 ATTCAGAAGGAGTCTACATTGCATCTTGTGTTGAGGTTAAGAGGAGGTAAAAAATCCTT 35028 >seq4618 Length=10119 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || ||| | ||||| | ||||| || |||| | Sbjct 430 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACTATCACTCTTGAAGTTGA-GCCATC 488 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || |||||| || ||||||||||| || || || || Sbjct 489 AGACACCATCGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 548 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||| | | |||||| || || ||||||| | | || || ||||| Sbjct 549 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 608 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAAA 25404 ||| |||||||||||||| | ||||| || | |||||||| || || || Sbjct 609 TATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGGGGTGGCAA 659 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || ||| | ||||| | ||||| || |||| | Sbjct 202 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGA-GCCATC 260 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || |||||| || ||||||||||| || || || || Sbjct 261 AGACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 320 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||| | | |||||||| || ||||||| | | || || ||||| Sbjct 321 GCAGAGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 380 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||||||||| || | ||||| || | ||||||||||| || Sbjct 381 TATCCAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGAGGTGG 428 Score = 86.0 bits (94), Expect = 6e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 || ||| | ||||| | ||||| || |||| | || || || || | || || || Sbjct 1 GGCAAAACCATCACTCTTGAAGTTGA-GCCATCAGACACCATTGAAAATGTTAAGGCTAA 59 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 ||| || ||||||||||| || || || ||||| || ||||| | | |||||| || Sbjct 60 AATCCAAGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCA 119 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTT 25380 || ||||||| | | || || |||||||| || ||||||||||| | ||||| Sbjct 120 GCTTGAAGATGGCCGCACACTCTCGGACTACAATATCCAGAAAGAATCCACACTCCATTT 179 Query 25381 AGTGTTAAGATTGAGAGGAGG 25401 || | ||||||||||| || Sbjct 180 GGTACTGAGATTGAGAGGTGG 200 >seq2744 Length=156805 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 |||||||| | |||||||| ||| | || || ||| | || || | || || ||| | Sbjct 156567 AACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCT 156626 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 || ||||| || | ||||| |||||| || ||||||||||| ||||| || Sbjct 156627 TCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGAC 156686 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTAC 25351 ||||| || || || | | || || || || ||||||| | | | || || ||| Sbjct 156687 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTAC 156746 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||||||||| | ||||| || | ||||||||||| || Sbjct 156747 AACATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 156796 >seq2773 Length=85211 Score = 100 bits (110), Expect = 3e-16 Identities = 166/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | ||||| || ||| | || |||||| | || || | || || || ||| Sbjct 66163 AAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGA-GCC 66221 Query 25232 AACG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || |||| || || | |||||| |||||| || ||||| ||||| || ||||| Sbjct 66222 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 66281 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGAT 25348 |||||| | || || | || || ||||| || ||||||| | | |||| ||| Sbjct 66282 TCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTC--TGAT 66339 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| |||||||| ||||| || |||| || || ||| | || |||| |||| Sbjct 66340 TACAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGAA 66394 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || || |||| || | ||||| || |||| | Sbjct 66394 ATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGA-GCCATC 66452 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | ||||| ||||| || ||||| || || || || || || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 |||| | ||||||| | ||||| ||||| ||||||| | | |||| || ||| Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTC--TGACTAC 66570 Query 25352 AATATTCAAAAAGAATCCACCATTCA 25377 || ||||||||||| || || |||| Sbjct 66571 AACATTCAAAAAGAGTCTACTCTTCA 66596 >SEQ37497 Length=345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || ||||||||||| || || || ||||| || ||||| | | |||||| || || ||| Sbjct 23 GACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAA 82 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 |||| | | | || || |||||||| |||||||||||||| | ||||| || | Sbjct 83 GATGGTCGTACACTCTCTGACTACAATATCCAAAAAGAATCCACACTCCATTTGGTACTG 142 Query 25388 AGATTGAGAGGAGG 25401 ||||||||||| || Sbjct 143 AGATTGAGAGGTGG 156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || ||| | ||||| | ||||| || |||| | Sbjct 158 ATGCAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGA-GCCATC 216 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || |||||| || ||||||||||| || || || || Sbjct 217 AGACACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCA 276 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || ||||||| | ||||||||| || ||||||| | | || || ||||| Sbjct 277 GCAGAGGCTCATTTTTGCCGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAA 336 Query 25354 TATTCAAAA 25362 ||| ||||| Sbjct 337 TATCCAAAA 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444720748814880