Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2773 114 1e-20 seq5513 105 5e-18 seq2744 93.3 3e-14 >seq2773 Length=85211 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| |||||| |||| |||||||| ||||| ||||| ||||| Sbjct 66622 ATGCAAATTTTTGTGAAAACACTGACAGGCAAGACTATTACTTTGGAAGTTGAACCTTCA 66681 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| ||||| ||||| |||||| | || || ||| Sbjct 66682 GATACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAA 66741 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | || || | ||| || |||||| |||||||| || || ||||||||| Sbjct 66742 CAGCGACTCATCTTTGCTGGAAAACAACTAGAAGATGGGCGTACACTGTCTGATTACAAC 66801 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||| |||||||| || || || ||||| | |||||||| ||| Sbjct 66802 ATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGA 66849 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 106256 AAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACC 106315 ||||||||| || ||||| || ||| | ||||| || ||||| ||| |||| || || Sbjct 66162 AAAAATGCAGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAGCC 66221 Query 106316 CGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGA 106375 ||| | ||| | || ||| |||||| ||||||||||| | || || Sbjct 66222 ATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCCGA 66281 Query 106376 TCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTA 106435 ||| || | ||||| | || || ||||| | |||||| || || ||||| Sbjct 66282 TCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGATTA 66341 Query 106436 CAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||||| ||||| |||||||| || || || ||||| | |||||||| ||| Sbjct 66342 CAACATTCAAAAGGAATCTACGCTTCACTTGGTATTACGCTTACGAGGTGGA 66393 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||| || ||||| || || | ||||| ||||||||||| ||||| |||||| Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || ||| ||||| ||||| |||||| | || || || Sbjct 67365 AGATACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCA 67424 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTAC 106436 ||| | || || | ||| || |||||| | |||||| | || |||| || ||| Sbjct 67425 ACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTAT--CTGACTAC 67482 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| ||||||||||| || | || |||||||| | | |||||||| Sbjct 67483 AACATTCAAAAAGAATCCACTTTGCACTTAGTATTACGTCTCCGAGGAGG 67532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| | || || ||||| |||||| | ||| ||| || Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || | | | || || ||||| |||||||||||| | || || || Sbjct 66453 AGATACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCA 66512 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| |||| |||| ||| ||||| ||| | |||||| || || || ||||| Sbjct 66513 GCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAA 66572 Query 106439 CATACAAAAAGAATCTACACTACA 106462 ||| |||||||| ||||| || || Sbjct 66573 CATTCAAAAAGAGTCTACTCTTCA 66596 >seq5513 Length=124375 Score = 105 bits (116), Expect = 5e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 99638 AACGGGTTTTATTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTTTGCAAAGTTGAA 99697 ||||| || || ||| | || || | || |||||||||||||| || |||||||| ||| Sbjct 11118 AACGGATTCTACTATCTAGGTCGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAA 11059 Query 99698 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCTGCAGATCATAAACGATGGGCGCCGCAA 99757 || ||| | ||| |||| |||||||| || |||| ||| ||| || | ||||| || ||| Sbjct 11058 ATCATGAGATGGGTGGAAGGCGACGATCCTGCTGTAGACCATCAAAGGTGGGCACCTCAA 10999 Query 99758 TGCCCGTT 99765 || ||||| Sbjct 10998 TGTCCGTT 10991 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 99902 ACTTTTGTGGATTGGCCGCTCAGTTTGAAACAAAAACCAGAGCAATTGGCCGAAGCCGGT 99961 || ||||| |||||||| | |||| || ||||| || ||| | | |||||||| ||| Sbjct 10836 ACATTTGTCGATTGGCCTCGCAGTATGCGCCAAAAGCCTGAGGAGCTAGCCGAAGCTGGT 10777 Query 99962 TTTTATTACACCGGCAAAGGTGACAAAGTTAAATGTTTTCATTGCGACGGCGGCCTCAAA 100021 || | ||||| || |||| |||||| ||||| || || ||||| || | || Sbjct 10776 TTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTTCTTCTGTGACGGTGGTTTGAAG 10717 Query 100022 GACTGGGAAAGCACCGACGAGCCGTGGCATGAACACGCACGTTGGTTTGATCGCTGCACA 100081 || ||||||| ||| || ||| | |||| ||||||||||| ||||| || | Sbjct 10716 GATTGGGAAAATGACGATATTCCCTGGGAGCAACATGCACGTTGGTTCGATCGATGTGCC 10657 Query 100082 TACGTGCGGCTTGT-AAAGG 100100 ||||| | ||||| ||||| Sbjct 10656 TACGTCCAACTTGTCAAAGG 10637 >seq2744 Length=156805 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||| |||||||| || ||| | |||||||| || |||||| | || |||||| Sbjct 156567 AACATGCAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCT 156626 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || || ||| | || || |||||| |||||||| || | || || Sbjct 156627 TCAGACACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGAC 156686 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATT 106434 || || |||||||| | ||| || || || | |||||| || | ||| | | | | Sbjct 156687 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTCTG--ACT 156744 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||||| ||||||||||| ||||| ||||| ||| |||| || |||| || Sbjct 156745 ACAACATCCAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGAGGTGG 156796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402000293096672