Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value SEQ38410 100 4e-15 SEQ38409 100 4e-15 SEQ55136 95.1 2e-13 >SEQ38410 Length=435 Score = 100 bits (110), Expect = 4e-15 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||| || || |||||||| |||| ||||||| | | ||| Sbjct 1 AAGGCGATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGCGGAG 60 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| || || | || ||||||||| ||||| || | ||| | ||||| Sbjct 61 GCGTCTCGTCTCGCCCACTACAACAAGCGGTCGACGATTACTTCGAGGGAGGTGCAGACT 120 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | || | ||| ||| |||||||| | |||||||||| |||||||||| Sbjct 121 TCGGTGAGGCTTCTGTTGCCCGGTGAACTGGCGAAGCACGCCGTCAGTGAGGGCACCA 178 >SEQ38409 Length=247 Score = 100 bits (110), Expect = 4e-15 Identities = 129/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||| || || |||||||| |||| ||||||| | ||||| Sbjct 1 AAGGCGATGTCCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGCCGAG 60 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || ||| || || | || ||||||||| ||||| || | ||| | ||||| Sbjct 61 GCGTCTCGTCTCGCCCACTACAACAAGCGGTCGACGATTACTTCGAGGGAGGTGCAGACT 120 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | || | ||| ||| || ||||| | |||||||||| |||||||||| Sbjct 121 TCGGTGAGGCTTCTGTTGCCCGGTGAGCTGGCGAAGCACGCCGTCAGTGAGGGCACCA 178 >SEQ55136 Length=707 Score = 95.1 bits (104), Expect = 2e-13 Identities = 164/233 (70%), Gaps = 13/233 (6%) Strand=Plus/Minus Query 724913 CTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCAT 724972 |||||| || |||||||||||| |||| || || ||| |||| |||| | || Sbjct 428 CTACAAAGTTCTCAAGCAGGTGTACCCGGACAC-----GGGAATC-TCCAGCAAGACTAT 375 Query 724973 GTCGATCATGAACTCGTTTGTCAACGACAT-GATCGACCGCATCGGCACCGAGGCCGGTC 725031 ||| |||||||||||||| || |||||||| |||| || |||| | ||||| ||| Sbjct 374 GTCCATCATGAACTCGTTCGTGAACGACATATATCG--CGTATCGCGGCTGAGGC--GTC 319 Query 725032 GC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || || |||| | |||||| || ||||||| | | | ||| | ||||| |||| Sbjct 318 GCGTCTCGCGCATTACAACAAACGTTCCACGATCACCTCCAGGGAGGTGCAGACTTCCGT 259 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || | ||| ||| | ||||||| ||||| || ||| ||||||| Sbjct 258 GAGAATGCTGTTGCTCGGTTAGCTGGCCAAACACGCGGTGAGCGAAGGCACCA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171333591011758