Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 140 3e-28 seq2773 109 5e-19 seq1406 87.8 2e-12 >SEQ58356 Length=38410 Score = 140 bits (154), Expect = 3e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 ||| || || || | |||||||||||| | ||| || ||| |||||| ||||| ||||| Sbjct 35033 TTTTTTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTA 35092 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 |||| || || || | || |||||||| ||||| ||||| ||||| || ||||| || Sbjct 35093 GTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATC 35152 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCG 35681 || |||| | ||| || | | ||| |||||| || | | || | | || ||| | Sbjct 35153 CGGTGGAATACCCTCTTTAT-CTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGG 35211 Query 35682 ATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 |||||||| | ||||| ||||| ||||| | |||||||| |||||||||||| Sbjct 35212 CCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCATT 35267 >seq2773 Length=85211 Score = 109 bits (120), Expect = 5e-19 Identities = 167/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| ||||| | || ||||| || | |||| |||||||||||||||||||| | Sbjct 66394 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66335 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || ||| | || || ||||| || || || || || | |||||||| || | || Sbjct 66334 ACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAG 66275 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGAT--- 35683 | | | || |||||| ||| ||| || || | | || | | || || |||| Sbjct 66274 GGATACCTTCTTTGTCC-TGAATTTTAGCTTTTACATTTTCAATTGTATC---CGATGGC 66219 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || ||||||| || || ||||| || || | || |||||||||||||||||| Sbjct 66218 TCAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATT 66165 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| ||||| | || ||||| || | |||| |||||||||||||||||||| | Sbjct 66850 TTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAG 66791 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || || ||| | || || || || || || ||||| || | ||||| ||||| | || Sbjct 66790 ACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAG 66731 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | || ||||||||| ||| ||| || || | | | | | || || | ||| Sbjct 66730 GGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCA 66672 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || |||| ||||||||||| || ||||| Sbjct 66671 ACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||| ||||| || | || ||||||| | || ||||| ||||| || ||||| Sbjct 67269 CTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAA 67210 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAG 35663 || | ||||| ||||| | ||| | || ||||| ||| ||| ||| |||| | | Sbjct 67209 GATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCCTGGAT-TTTGGCTTTGACAT 67151 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| | ||| || |||| || || || || ||||| | ||||||| Sbjct 67150 TCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCA 67091 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 67090 CAAAAATTTGCAT 67078 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||||||||| || | || ||| || | || ||||| ||||| || ||||| Sbjct 66585 CTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAA 66526 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||| |||||||||| ||| | || || ||||| ||| || ||| | | Sbjct 66525 AATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTT 66466 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || || | || || || | || ||||| ||||| || | |||||| || Sbjct 66465 TTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAAC 66406 Query 35725 AAATATCTGCATTC 35738 ||| || ||||||| Sbjct 66405 AAAGATTTGCATTC 66392 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||||||||| || | | ||||||| | || ||||| ||||| || ||||| Sbjct 67041 CTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAA 66982 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAG 35663 || | ||||| ||||| | ||| | || ||||||||| ||| ||| || || | | Sbjct 66981 GATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACAT 66923 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || | ||| || |||| || || || || || || | ||| || | Sbjct 66922 TCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGA 66863 Query 35724 CAAATATCTGCATTC 35738 |||| || ||||||| Sbjct 66862 CAAAGATTTGCATTC 66848 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | | ||||||| | || ||||| || || || ||||| Sbjct 67496 TCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAG 67437 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 || | ||||| ||||| | ||| | || ||||||||| ||| ||| || || | | | Sbjct 67436 ATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATT 67378 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || | ||| || |||| || || || || || || | ||| || || Sbjct 67377 CTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGAC 67318 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 67317 AAAGATCTGCATTC 67304 >seq1406 Length=443732 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 43150 AAGGAGTTGTGTATTGGATGTCGCGAGACAGCCGCATCGAAGACAACTGGGCCTTTCTAT 43209 ||||| |||| || |||||||| || ||||| || | | || || ||||| ||| ||| Sbjct 36333 AAGGAATTGTATACTGGATGTCTCGTGACAGTCGAGTTCAGGATAATTGGGCTTTTTTAT 36392 Query 43210 ACGCCCAACAGATGGCCATCGAACACAAGGTGCCCTTGCACGTCTGCTTCTGT 43262 | |||||| || |||| | || | |||| ||||||||||||||||||||| Sbjct 36393 ATGCCCAAAAGTTGGCTTTGAAAAATGAGGTTCCCTTGCACGTCTGCTTCTGT 36445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450415164407720