Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 684 0.0 SEQ58105 111 2e-19 >SEQ17521 Length=26855 Score = 684 bits (758), Expect = 0.0 Identities = 1222/1773 (69%), Gaps = 22/1773 (1%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | |||||| || || | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| ||||| | |||| | || ||||| || || ||||| |||| |||| Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 || |||| ||| || || | || |||||||| || || || || |||||||| || ||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 || | ||| || | || || ||||||||| | |||||| | | | | | ||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTAATATCT 3762 Query 68605 TCTGGAA--GGCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 | |||| | || |||| |||| || ||| || | ||| | ||| || || Sbjct 3761 TTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGAAGAATAAGATTTTTCATG 3702 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 ||||| | |||||| | | | || ||| |||| | ||||| | || || | |||| Sbjct 3701 TCATCGTCCCACAAATCTGCTTGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTTGA 3642 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 ||||| || ||||| |||| | ||| ||||| ||| ||||||| | |||||| Sbjct 3641 AATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTCA 3582 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 ||||| || || || || || || ||||| ||||||||||| |||| | | | ||| Sbjct 3581 TTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATTA 3522 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGT 68901 | || |||||| | ||||| ||||| ||| ||||||||| ||||||| || Sbjct 3521 CGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGGGC 3462 Query 68902 ACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTT 68961 |||||| | ||| |||| | ||| || | || || || | ||||| Sbjct 3461 GTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATGAA 3402 Query 68962 TCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATT 69021 |||| ||| || | || |||| |||||| || || || || || |||||||| || Sbjct 3401 CTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGATA 3342 Query 69022 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAA 69081 || || || |||| | || | ||||| | ||| || | || || | | Sbjct 3341 GTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCATC 3282 Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 || | ||| ||||| || || || || || |||||||| || |||||||||| | |||| Sbjct 3281 AGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTG 3222 Query 69142 GAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGG 69201 || ||| ||||||||||| ||||||||||| | ||||||||||||||| || ||| || Sbjct 3221 GAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTTGG 3162 Query 69202 ACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTC---CATCTATAACA 69258 || | ||| || || |||| || ||||| | || |||| | ||| Sbjct 3161 GTTATAATTTTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCATTTACA 3102 Query 69259 AACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCAT-TAGA-ATTTGCAT 69316 |||||||||| || | ||| |||| |||||| |||||||| |||| || || || | Sbjct 3101 AACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGATGTG--T 3044 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 ||| || ||| ||||||||||||||||||||||| || || || ||||||| |||||||| Sbjct 3043 ATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTAC 2984 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 ||||| ||||||| | || ||||| | || || ||||| || ||||||| || | || Sbjct 2983 TCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTT 2924 Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT- 69495 | | ||||| ||||| | || || |||| | | || |||| ||| |||| Sbjct 2923 CTACAATAGCCTTCCATAAAACTTGTGCTTTTACT----TGTT-TAACAAATCTTTTTTC 2869 Query 69496 ----TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGG 69551 ||||| | | ||| || ||| || || ||||||||| ||| |||| ||||| Sbjct 2868 ATTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGG 2809 Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 ||| |||| ||||||||||| ||| |||| | | ||||| ||||||||| | Sbjct 2808 ACAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAA 2749 Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtt 69671 ||| || ||||| | ||| ||| | || || | || | |||||| || || ||||| Sbjct 2748 ATCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATT 2689 Query 69672 ttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 69731 ||||| ||||| | |||||| | | ||| |||||||||||||||| ||||| || | Sbjct 2688 CTTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAAA 2629 Query 69732 GACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCT 69791 | || || || || || || || ||||||| |||||||| ||| | ||||| ||||| Sbjct 2628 TGCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCT 2569 Query 69792 CAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGC 69851 | ||| || | || ||||| ||| ||||||||| |||| ||| | | ||| | || Sbjct 2568 TAACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAGC 2509 Query 69852 GCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACG 69911 || ||| || | || || || || ||||| |||||| || | ||||| | Sbjct 2508 TCGGATACAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTG 2449 Query 69912 TTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTT-AAGAAGAAAACAGC 69970 ||||| ||||||||||| ||||| || || |||||| ||||| || |||||| || Sbjct 2448 TTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGA 2389 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 | |||| |||| | | ||| | ||| |||||| |||||| ||||||||||| Sbjct 2388 T-GACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAAAT 2330 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTC 70090 | || ||||| | | |||||| || | ||| ||||| || || || ||| || | Sbjct 2329 ACTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATAC 2270 Query 70091 CTATCGCGACACGCATCAACATATGCTGAGGTC 70123 | || || |||||||| | |||||| || |||| Sbjct 2269 CAATAGCTACACGCATTAGCATATGTTGTGGTC 2237 Score = 116 bits (128), Expect = 5e-21 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 70323 TTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCT 70382 || |||||| | | ||| ||||||| ||||||||||||||||| |||||||||||||| Sbjct 447 TTTCATTACCTGA--AAAGTGTTTTTTAGTTTCCTTGTGTAAATTAGATATGGCTATTCT 390 Query 70383 GGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGC 70442 ||||| || | ||||||||||||||| | |||| || || ||| | || ||||| Sbjct 389 AGCTGCAAGTACAGCATAGTCAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGC 330 Query 70443 TAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 70498 || |||| | || | ||| || ||||| ||| | ||| ||||||||||| Sbjct 329 CAAGTTATCAAGCTCAACAGTCGTCACTCCTGAATACAAACCTCCAATAACTTTCA 274 >SEQ58105 Length=99015 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||| | || ||| || || | |||||||| || |||||||| | Sbjct 17319 CCTCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCT 17260 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| || | ||||||| || || || || || || ||||| |||||||||| Sbjct 17259 TTAACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATG 17200 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAG 39815 | |||| | ||||| | ||| | || || ||||| | | ||||| || | Sbjct 17199 CTACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTG 17140 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | ||||| || |||||||||| ||||||||||||||||| Sbjct 17139 CCTTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 17100 Score = 109 bits (120), Expect = 8e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 ||||| || ||||| || |||||||| || || | ||||| || || || || || Sbjct 16456 TATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAAC 16397 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || || |||| || ||||||| ||| |||||| |||||| ||| | | |||| Sbjct 16396 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTT 16337 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || ||||||||| || ||||||||||| | || |||||||| |||| | | Sbjct 16336 TCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATGTCTC 16277 Query 40067 TCA 40069 ||| Sbjct 16276 TCA 16274 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||||| ||| ||||||||| | |||||||| || || || || ||||||||||| | | Sbjct 16168 TTTGATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACATTTCC 16109 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAATCTA 40201 || ||||| |||| || || ||||| |||||||||||| Sbjct 16108 CAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686332148648760