Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value SEQ58105 116 3e-21 >SEQ58105 Length=99015 Score = 116 bits (128), Expect = 3e-21 Identities = 152/206 (74%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 44039 TTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 || |||||||| |||||||| | ||| ||||| | || |||||||||||||| || Sbjct 17097 TTATTTAATGCTATAGAAACTTTGCCTTGTGTTAAAAAGAAGGCAGACTGGGCCCTACAA 17156 Query 44099 TGGATAA-ATTCAAA--TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| | |||| || | ||||||||||| |||| || ||||||| || || Sbjct 17157 TGGATTGCAAGCAAAACTGCAACATTTGGAGAACGTATTGTAGCATTTGCAGCGGTAGAG 17216 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 || ||||| || ||||| ||||| | || |||||||||||||| || || | ||| Sbjct 17217 GGTATTTTTTTCTCAGGCAGTTTTGCTTCTATCTTTTGGTTAAAGAAGCGTGGACTCATG 17276 Query 44216 CCTGGGTTGACGTTTTCA--AATGAG 44239 ||||| ||||| ||||| |||||| Sbjct 17277 CCTGGTTTGAC--TTTCAGTAATGAG 17300 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 ||| | || ||||||||||| || || || |||||||||||| | || || ||| Sbjct 16296 GTTCTAGCATTTTTTGCTGCATCTGATGGAATTGTCAATGAAAATCTAGTGGAGCGATTT 16355 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | ||||| |||||| | | || || ||| || |||||||| ||||| ||||| ||| Sbjct 16356 TCACAAGAGGTTCAAGTTACTGAGGCCAGATTCTTCTATGGGTTCCAAATAGCCATGGAA 16415 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||| |||| || ||||||||| || | || || || ||||| Sbjct 16416 AATGTTCACTCTGAAATGTACTCCCTATTAATTGACACATACAT 16459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397130682139795