Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 172 7e-38 >SEQ17521 Length=26855 Score = 172 bits (190), Expect = 7e-38 Identities = 894/1408 (63%), Gaps = 44/1408 (3%) Strand=Plus/Minus Query 110698 TCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTG 110757 || ||| |||| || |||| || ||||||||||| |||||||||| || | || || Sbjct 3624 TCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATTCATTATTGCCAAGTATCTG 3565 Query 110758 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTT 110817 ||| || || || |||||||| || |||| | ||| ||||||| || | | Sbjct 3564 TGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAATTACGAATTCCATGTTTAGC 3505 Query 110818 GATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATG 110875 || ||| || ||| || |||| || || || | | || || |||| |||| Sbjct 3504 TATTTTTTCTTTAAGAGCAACCCAATCCCAGA-GATCAGTGGGCGTCTTATTCC-ACATA 3447 Query 110876 TCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGG 110935 ||||| || | | ||||||| | ||| ||| ||| | | ||| || | Sbjct 3446 TCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATGAACTATAAACTCCCTCT 3387 Query 110936 GCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 || || ||||||||||| || |||| | | ||| ||| || || ||||| || | Sbjct 3386 TTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGATAGTCTCAAATATCTGT 3327 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCC 111055 || | | | |||| || ||| | | |||||| || | ||| |||| Sbjct 3326 TGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCATCAGCACAAAGGCATCA 3267 Query 111056 GCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTC 111115 || | |||||| || || | ||| || ||||| ||||||||||| || ||| || || Sbjct 3266 GCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTGGAGTTTTTAGCT-TC 3208 Query 111116 TC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 | ||| |||||| |||| || || | | ||||| |||| ||| | ||| ||||| Sbjct 3207 TGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTTGGGTTATAATTTTTGT 3148 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 | ||| | | |||||| ||| | || | | || ||||| ||| || | | Sbjct 3147 AACTTCTTTTAACTTTTCAAAATTGTACGTTCTA---TCATCATTTACAAACATATTCAA 3091 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATT 111292 || || || || ||||| || || || ||||| || || ||||| |||| ||| Sbjct 3090 AGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGAT--GTGTATTCTACTATT 3033 Query 111293 TCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 |||||||||| || || ||||| || || | ||| || || |||||||| |||| Sbjct 3032 TCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTACTCTTTCTGTTA 2973 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || | ||| ||||| | |||| | || || || || || |||| || | ||||||| Sbjct 2972 CATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTTCTACAATAGCC 2913 Query 111413 TTCCAAACATCGGCGGCTGGTACAATGGCGTTGGC---CCGTCCCTCCGCCTCGTACTTT 111469 ||||| | | | ||| ||| || || | | | || ||| |||||| Sbjct 2912 TTCCATAAAACTTGTGCTTTTAC-TTG--TTTAACAAATCTTTTTTCATTCTCATACTTT 2856 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 || |||||||||||||| || ||| || | | ||| || | | ||| Sbjct 2855 TCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAGGACAGTCATGGGGA 2796 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | | | ||| | || || ||||| | ||||| || | ||||| ||||| Sbjct 2795 CACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACAAATCTGGTATCCAT 2736 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACC----TTGGTTGAGTCGTAA 111645 | | |||| | || ||| ||| | ||||| | ||| || || || | Sbjct 2735 AAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTATTCTTT--TTCAGAT 2678 Query 111646 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 111705 || || ||||| | | ||| | |||||||| || | ||| || || | || || Sbjct 2677 CTAAA--AACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGC---AAATGCCCC 2623 Query 111706 TCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 | ||||| ||| |||||| |||||| | |||||| |||| |||| | | ||| Sbjct 2622 TGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTCTTAACAT 2563 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTA---TTGGCTCT 111816 ||| | || |||| |||| ||||||||| || |||| || || || |||| Sbjct 2562 TGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATAC---ATGTACCTTTAGCTCG 2506 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | || | || | |||||| || || || | || || || ||||| | | Sbjct 2505 GATACAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCACATTGTTT 2446 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 ||||| |||| || || | || ||| || || |||| | | ||| ||| || Sbjct 2445 CAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAACAAGATGA 2386 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || || |||||||| ||| ||||| || | || || | |||||| |||| |||| Sbjct 2385 CAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGTGAA-ATACT 2327 Query 111997 T-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 | | |||| | ||| || | | | |||||||||||||| || || || || | Sbjct 2326 TCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATGTATACCAA 2267 Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083 | || || ||||| | ||| | ||||| Sbjct 2266 TAGCTACACGCATTAGCATATGTTGTGG 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627504774986400