Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 98.7 1e-15 >SEQ17521 Length=26855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 247/370 (67%), Gaps = 9/370 (2%) Strand=Plus/Minus Query 118525 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAG 118584 |||| || | ||||||||| || | || ||||| | ||||| |||||| || || || Sbjct 3271 CATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATATTGGAGTTTTTAG 3212 Query 118585 CGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 118643 | ||| | | |||||| |||| ||| |||| ||||||| |||| ||| | || Sbjct 3211 CT-TCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTTGGGTTATAATT 3153 Query 118644 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 118703 ||||| | ||| | | |||||| ||| | | | | || ||||| ||| || || Sbjct 3152 TTTGTAACTTCTTTTAACTTTTCAAAATTGTACGTTCTA---TCATCATTTACAAACATA 3096 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTA 118761 | || || || || | |||||| || | ||||| || || ||||| |||| Sbjct 3095 TTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGAT--GTGTATTCTA 3038 Query 118762 TAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG 118821 ||||| || || | || || ||||| || || | || || ||||| |||| Sbjct 3037 CTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGATTACTCTTTC 2978 Query 118822 TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAA 118881 ||||||| | ||| ||||| | |||| |||| || || || || ||| | | | || Sbjct 2977 TGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGTGCTTCTACAA 2918 Query 118882 TAGCCTTCCA 118891 |||||||||| Sbjct 2917 TAGCCTTCCA 2908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617916031380040