Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 197 2e-45 >SEQ17521 Length=26855 Score = 197 bits (218), Expect = 2e-45 Identities = 1041/1644 (63%), Gaps = 50/1644 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| | ||||| || || || ||||| ||||| |||||||||||||| | Sbjct 2239 CCACAACATATGCTAATGCGTGTAGCTATTGGTATACATGGAGAAGACATTGATTCAGCA 2298 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | || ||| | |||| | | |||| |||| |||||| | || || | || Sbjct 2299 ATTAACACCTACAATTTATTGTCTGAGAAGTAT-TTCACTCACGCCAGTCCTACTTTATT 2357 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||| ||| |||||||| ||| |||| ||| ||| | | |||| || || || Sbjct 2358 TTCTGCTGCTACTCCAAGACCTCAATTGTCATCTTGTTTCTTATTGGCCATGAAAGATGA 2417 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | || || |||| ||||| | | ||||| || || || | || || Sbjct 2418 CAGTATTGAGGGAATATATGACACTCTGAAACAATGTGCCTTGATATCTAAATCTGCAGG 2477 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAA---TAAATCTCGTATTCGGGGGAC 104517 || |||||| | || | || | | |||| || || || |||| || || Sbjct 2478 TGGCATTGGGCTTCATGTTCACTGTATCCGAGCTAAAGGTACAT---GTATAGCTGGCAC 2534 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||||||| |||| |||| || | |||||| | | |||| |||| |||||| | || Sbjct 2535 AAATGGTGTATCAAATGGACTTGTCCCAATGTTAAGAGTATATAACAGCACAGCCAGATA 2594 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 |||| |||||| ||| ||||| | || || | || || ||| | || ||||| Sbjct 2595 TGTAGATCAAGGTGGTAACAAGCGTCCAGGGGCATTT---GCTGTATATTTAGAACCATG 2651 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 ||| | ||| | | ||||| | || || || ||| | || || | || Sbjct 2652 GCATTCAGATGTGTTTGAGTTTTTAGATCTGAAAAAGAATACTGGTAAAGAAGAAGTTCG 2711 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | || | || | ||| | ||||| |||||| | || ||||| |||||||| | Sbjct 2712 AGCTAGGGAATTGTTTTATGCTTTATGGATACCAGATTTGTTTATGAAAAGAGTTGAAAA 2771 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 | || |||||| | | | ||||| | | |||||| | | ||| ||| Sbjct 2772 AAATGAAAATTGGAGTTTGATGTGTCCCCATGACTGTCCTGGTTTGGCAGATTGTTGGGG 2831 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAGAAGGTCGGGCGACTGCGAC 104868 || ||||||||||||||||| |||||| ||| ||| || | | | | | Sbjct 2832 AGAAGAGTTTGAAGCCCTTTATGAAAAGTATGAGAATGAAAAAAGATTTGTTAAA-CAA- 2889 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || ||| | | | ||||| |||||| | | | ||| || || || || || Sbjct 2890 -GTAAAAGCACAAGTTTTATGGAAGGCTATTGTAGAAGCACAAGTTGAAACAGGCACTCC 2948 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 || |||| | |||||||| | |||||| |||||||||||| || ||| | || || Sbjct 2949 ATTCATGTTATACAAAGATTCATGTAACAGAAAGAGTAATCAGAAAAATCTAGGAACAAT 3008 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 || || ||||| ||||||||||| | |||| ||| |||||| || || Sbjct 3009 TAAATGTAGTAATCTATGTACAGAAATAGTAGAATACACATCAGTAGATGAAGTAGCAGT 3068 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTG 105107 ||||| | || || || ||| | | || ||| || || | || | ||| Sbjct 3069 ATGTAATTTAGCTTCTATTGCTTTGAATATGTTTGTAAATGATGATAGAACGTACA---- 3124 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 ||| |||||| | | |||||||| |||| | | ||| |||||||||| | | |||| | Sbjct 3125 ATTTTGAAAAGTTAAAAGAAGTTACAAAAATTATAACCCAAAACCTAAATAAAATTATAG 3184 Query 105168 ATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 || |||| ||| || ||| ||| ||| || || |||||| |||| | ||||| Sbjct 3185 ATGTCAATTATTATCCAGTTCCAGA-AGCTAAAAACTCCAATATGCGACATAGACCAATA 3243 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 ||| | || || || ||| | || |||| || | || ||| || | | ||| Sbjct 3244 GGTATTGGAGTCCAAGGTTTAGCTGATGCCTTTGTGCTGATGCGCTACCCTTATGAAAGT 3303 Query 105287 GACGAAGCGAAG----GAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 || |||| | ||| ||| | ||||||||||| || ||| ||| ||| | Sbjct 3304 GAAAAAGCATTGTTGTTAAACCAA----CAGATATTTGAGACTATCTATTACGGAGCTTT 3359 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 || || || | || || || ||| || || ||| | | ||| ||| ||| Sbjct 3360 GGAAGCTAGCTGTGAATTAGCGGAGAAAGAGGGAGTTTATAGTTCATATGAAGGTAGTCC 3419 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACG 105461 | | |||||| | | ||||||||||||| |||| || | ||| || || | Sbjct 3420 TGTTAGCCAAGGGATTTTGCAATTTGATATGT-GGAATAAGACGCCCACTGATCTCTGGG 3478 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | |||| ||||| || ||| || | | || ||||||| ||| || ||| Sbjct 3479 ATTGGGTTGCTCTTAAAGAAAAAATAGCTAAACATGGAATTCGTAATTCTCTGCTACTGG 3538 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || |||||||| || || || ||||| || | || |||||||||| ||||||||| | Sbjct 3539 CGCCTATGCCAACGGCATCTACGGCACAGATACTTGGCAATAATGAATCCTTTGAACCAT 3598 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 || | || || || | ||| || | | ||||| ||| |||| ||| | | Sbjct 3599 TTACTTCAAATATATACCAAAGACGAGTATTATCAGGAGAATTTCAAGTTGTGAACCATC 3658 Query 105642 ATCTCGTG-GA----TGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 105696 |||| || || ||| ||||| ||||| | ||| | | || ||||| |||| Sbjct 3659 ATCTTTTGAGAGATTTGA-CTCAAGCAGATT----TGTGGGACGATGACATGAAAAATCT 3713 Query 105697 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAA 105756 || | | |||||| |||| ||||||| |||||| || || |||| | Sbjct 3714 TATTCTTCATAATAATGGTTCAGTTCAGAATATTGAATCTATTCCCAAAGATATTAGAGA 3773 Query 105757 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 105816 ||||| ||||| |||||||| |||| | ||| | ||||| || ||| | Sbjct 3774 TTTGTATAAGACAGTATGGGAAATTTCTGTGAAAACTACTATTCAGATGGCTGCTGATAG 3833 Query 105817 TGGTCGCTTCATTGATCAAAGTCA 105840 ||| || || || |||||||| Sbjct 3834 AGGTGCATTTATAGACCAAAGTCA 3857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582771159849160