Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq5513 192 4e-44 seq2773 123 2e-23 seq2744 107 1e-18 seq4618 93.3 3e-14 >seq5513 Length=124375 Score = 192 bits (212), Expect = 4e-44 Identities = 375/559 (67%), Gaps = 23/559 (4%) Strand=Plus/Minus Query 46829 TGGCCCGTCACTTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATCTTGGA 46888 ||||| || | ||||| ||||| ||| | || |||||||| || ||||| || Sbjct 11157 TGGCCTGTTTCATTTATCACACCTGAACGCTTAGCTAAAAACGGATTCTACTATCTAGGT 11098 Query 46889 AGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAGAGGGT 46948 | || |||||||| || ||||| || ||||| || || |||||| | |||| || || Sbjct 11097 CGGGGCGATGAAGTGCGCTGCGCTTTCTGCAAAGTCGAAATCATGAGATGGGTGGAAGGC 11038 Query 46949 GATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTCGTAAGAAATGTT 47008 || |||||||| | ||||||| || | ||||| ||||| ||||||||| ||||| || Sbjct 11037 GACGATCCTGCTGTAGACCATCAAAGGTGGGCACCTCAATGTCCGTTCCTAAGACATCAA 10978 Query 47009 ACTGAAAATA--CTGATGTAAACGAAAATNNNNNNNNNNNNNNNNNNNNNNTTGAA-AAT 47065 ||| ||| | |||| || || | | ||| || Sbjct 10977 GCTGGCAATGTGCCGATGGAATCGCCTA-CATCTGACGGCCGTGACGAATGTGGAACAAG 10919 Query 47066 AG--------ACTT--GTTGCTAATATCAAT---------CCCGCCCATCCTCAATATTC 47106 || ||| | ||| |||| || ||||| || || | |||| | Sbjct 10918 AGCGCCAACAACTCAAGCTGCACCTATCCATATACCACGACCCGCTCACCCCCGATATGC 10859 Query 47107 ATCTGAAGCTGCTCGTTTGAACACTTTTAAAGATTGGCCTCGTGGTTTGCGTCAGAGACC 47166 ||| |||||||| ||| | || ||| ||||||||||| || |||| || | || Sbjct 10858 ATCCGAAGCTGCCCGTCTCCGTACATTTGTCGATTGGCCTCGCAGTATGCGCCAAAAGCC 10799 Query 47167 AAAAGAGTTAGCGGACGCGGGCTTCTTTTATACTGGTGAAGGTGATAAAACGAAGTGTTA 47226 | ||| |||| || || || ||||| || |||||| |||| || |||||||| || | Sbjct 10798 TGAGGAGCTAGCCGAAGCTGGTTTCTTCTACACTGGTCAAGGAGACAAAACGAAATGCTT 10739 Query 47227 TTATTGTGATGGTGGTCTGAGAGATTGGAACGAAGAAGATATACCTTGGGAGGAGCACGC 47286 | ||||| |||||| ||| |||||| | | || ||||| || |||||| | || || Sbjct 10738 CTTCTGTGACGGTGGTTTGAAGGATTGGGAAAATGACGATATTCCCTGGGAGCAACATGC 10679 Query 47287 TCGTTGGTTTGATCGTTGTGTCTACGTTAAATTGGTAAAAGGAGAAGATTTTATTCAAAG 47346 |||||||| ||||| |||| |||||| || | || |||||| ||| | | |||||| Sbjct 10678 ACGTTGGTTCGATCGATGTGCCTACGTCCAACTTGTCAAAGGACGAGAGTATGTTCAAAA 10619 Query 47347 AGTTAAATCGGAAGCGTGT 47365 |||| ||||||||||||| Sbjct 10618 GGTTATATCGGAAGCGTGT 10600 >seq2773 Length=85211 Score = 123 bits (136), Expect = 2e-23 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTC-TAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 || |||| |||| || || ||||| || || || |||||||||||||| ||||| || Sbjct 66848 CCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGA 66790 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| ||| | ||||| |||||||| || ||||| || | ||||||||||| || || Sbjct 66789 CAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 66730 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | |||||| | |||||| ||| || | Sbjct 66729 GATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAA 66671 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | |||||||||||||| ||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 114 bits (126), Expect = 8e-21 Identities = 170/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 34480 CCGCCTC-TAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 || |||| |||| || || ||||| || || || |||||||||||||| ||||| || Sbjct 66392 CCACCTCGTAAG-CGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGA 66334 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| ||| | |||||||| ||||| || || || || | |||||| || || || || Sbjct 66333 CAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGG 66274 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCT--CTC 34655 | || || ||||| ||| ||| | ||||| | |||||| || || | ||| Sbjct 66273 GATACCTTCTTTGTC-CTGAATTTTAGCTTTTACATTTTCAATTGTATC--CGATGGCTC 66217 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| |||||| ||||| || || | || |||||||| |||||||| || Sbjct 66216 AACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTT 66163 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| ||||| || || || || | |||| || ||||||||||| || || || Sbjct 67533 GCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 67474 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || |||||| | ||||| |||||||| || ||||| || | ||||||||||| || || Sbjct 67473 TAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 67414 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | ||| || | |||||| ||| || | Sbjct 67413 GATGCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTA 67355 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || ||||| |||||||| Sbjct 67354 CTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || | || ||||| ||| |||||||| || || || || Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||||| | ||||| ||||| || || ||||| || | ||||||||||| || || Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||| ||| | ||| || | ||||||||| || || Sbjct 67184 ATGCCTTCCTTATCCTGGAT-TTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAAC 67126 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || |||| |||||||||||||| ||||| Sbjct 67125 TTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | || |||||| ||| ||||||||||| || || || Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||||| | ||||| ||||| || || ||||| || | ||||||||||| || || Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| ||| ||| | |||||| | |||||| ||| || || Sbjct 66956 ATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAAC 66898 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || | || || ||||| || ||||| Sbjct 66897 TTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||||| || | || ||||| ||| ||||||||||| || || || Sbjct 66620 CCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGAC 66561 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||| || || ||||| || | || || |||||||| || Sbjct 66560 AGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGG 66501 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT--TCGCTCTCC 34656 | || || |||||| ||| ||| | || ||| | || || ||| | ||||| Sbjct 66500 ATGCCTTCTTTGTCTTGGAT-TTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCT-- 66444 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | ||| ||||| ||||| || | ||||| ||||| || ||||| Sbjct 66443 ACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 >seq2744 Length=156805 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||||||||| ||| || ||||| ||||| || || || Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAG 156737 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||| || ||||| ||||| || | | ||| ||||| ||||| Sbjct 156736 AGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGG 156677 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | |||| | ||| |||||| || || Sbjct 156676 ATACCCTCTTTGTCT-TGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTAC 156618 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || ||||| || || | || || ||||||||||||||||| Sbjct 156617 CTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >seq4618 Length=10119 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||||||||||| || || ||||| || || || || || Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | |||||||| ||||| || ||||| || | | ||| ||||| || || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| ||| ||| | ||||| | ||| |||||| ||| || Sbjct 308 ATACCCTCTTTGTCT-TGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAAC 250 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||| || || || || || || ||||| ||||| Sbjct 249 TTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||| ||| || ||||| || || || || || ||||| || | |||||| Sbjct 638 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 579 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || |||||||| || | | ||| ||||| || || | ||||| |||||| || Sbjct 578 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCT-TG 520 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | ||||| | || |||||| ||| ||||| | || || ||||| Sbjct 519 AATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTT 460 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| ||||| Sbjct 459 GCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314471993724047