Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2773 89.7 4e-13 >seq2773 Length=85211 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 ||||||||| ||||| |||||||| || || || ||||| | || || || | | Sbjct 66393 AATGCAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATC 66452 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | || || || ||||| ||||||||||| | || ||| Sbjct 66453 AGATACTATCGAAAAC--GTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGAC 66510 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||||||| | |||||||| || || ||| |||| || | ||| | | |||| || ||| Sbjct 66511 CAGCAACGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTAC 66570 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||||||| ||| | || | ||| ||||| |||| || || Sbjct 66571 AACATTCAAAAAGAGTCTACTCTTCACCTTGTTCTGCGTCTGCGAGGTGG 66620 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGC 27846 |||||| || ||||| || ||||||||||| || ||||| | || || ||| | Sbjct 67305 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTC 67364 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| |||||| ||||| ||||| ||||| | || || Sbjct 67365 AGATACAATTGAGAAT--GTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGAC 67422 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | || ||||| ||||||||| |||| || | || | | | || || ||| Sbjct 67423 CAACAGCGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTAC 67482 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| |||||||| ||||||||| || || || ||| | || || ||| Sbjct 67483 AACATTCAAAAAGAATCCACTTTGCACTTAGTATTACGTCTCCGAGGAGGC 67533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355571126514393