Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2773 181 2e-40 seq2744 131 4e-25 seq4618 120 7e-22 SEQ58356 104 5e-17 >seq2773 Length=85211 Score = 181 bits (200), Expect = 2e-40 Identities = 168/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||||||||||||||| ||||| || || | ||||| | |||||| Sbjct 67061 AGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCT 67002 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||| || || |||||||| || |||||||| ||||| | |||||||||||| Sbjct 67001 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 66942 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || || || || |||||| || | ||| || ||| Sbjct 66941 TGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGTC 66882 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || |||||||| ||||| | |||||| Sbjct 66881 TTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| ||||||||||| ||||| || || | ||||| | ||||||| Sbjct 66605 AGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCT 66546 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| || || || || ||||| ||||| ||||| | ||||| ||||| Sbjct 66545 TCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCT 66486 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || || ||||||||||| || || || || || || | || |||||| Sbjct 66485 TGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTC 66426 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || |||||||| || ||||| | |||||| Sbjct 66425 TTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| ||||||||||| || || || || | ||||| | |||||| Sbjct 67289 AGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCT 67230 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| ||||| || || |||||||| || |||||||| ||||| | |||||||| ||| Sbjct 67229 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTATCC 67170 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || || ||||| || |||||| || | ||| || ||| Sbjct 67169 TGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGGTC 67110 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || ||||| | ||||| Sbjct 67109 TTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| | |||||| |||||||| ||||| || || | ||||| | ||||||||||| || Sbjct 67509 GTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTG 67450 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || ||||| || || |||||||| ||||| | ||||||||||||||||| || Sbjct 67449 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTT 67390 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || || || || || || ||| || || | ||| || |||||||| || Sbjct 67389 GGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGT 67330 Query 211091 GAGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| | ||||||| Sbjct 67329 AAGAGTCTTGACAAAGATCTGCATT 67305 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || || ||||| ||||| ||||| | || || | |||||||| ||||| Sbjct 66369 GTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCAAGCTG 66310 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || |||||||||||||| || || || || ||||| | ||||| |||||||| || || Sbjct 66309 TTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAATTTT 66250 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||| || || || || |||||||| | || || || ||||| || Sbjct 66249 AGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTTTTTCCAGT 66190 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| ||||| | ||||||||| Sbjct 66189 GAGTGTCTTCACAAATATCTGCATTTT 66163 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || || || ||||| ||||| ||||| | || || | |||||||| || || Sbjct 66825 GTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTAGTTG 66766 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || || ||||| || || |||||||| ||||| | ||||||||||||||||| || Sbjct 66765 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTT 66706 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || || || || || || |||||| || | ||| || ||||| || || Sbjct 66705 GGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCTGT 66646 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| | ||||| Sbjct 66645 CAGTGTTTTCACAAAAATTTGCAT 66622 >seq2744 Length=156805 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || ||||| |||||||||||||| || || | || || | || Sbjct 156785 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACC 156726 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| |||||||| || || |||||||| | || ||||| || || | || || || Sbjct 156725 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTT 156666 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || || || ||||| || ||||| || ||| ||||| || || || Sbjct 156665 GTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAAT 156606 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATG 211120 || || || ||||| ||||||||||| | |||||| || || Sbjct 156605 AGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTTCTG 156564 >seq4618 Length=10119 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || ||||| ||||||||||| || || |||| || || | || Sbjct 645 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 586 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| ||||||||||| || ||||| || | || ||||| || || | || || || Sbjct 585 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 526 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || || || |||||||||||||| || ||||| || |||||||| Sbjct 525 GTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 466 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||||| || || | ||||| Sbjct 465 AGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Score = 111 bits (122), Expect = 4e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || ||||| ||||| ||||| || || |||| || || | || Sbjct 189 TCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGGCC 130 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| ||||||||||| || ||||| || | || ||||| ||||| | || || || Sbjct 129 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTT 70 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| ||||| || || || ||||| |||||||| || ||||| || |||||||| Sbjct 69 GTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 10 Query 211079 CGTCTTTCC 211087 || || || Sbjct 9 GGTTTTGCC 1 Score = 105 bits (116), Expect = 2e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || || || || ||||||||||| || || |||| || || | || Sbjct 417 TCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 358 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| ||||| ||||| || ||||| || | || ||||| || || | || || || Sbjct 357 ATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 298 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || || || ||||| |||||||| || ||||| || |||||||| Sbjct 297 GTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 238 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || | ||||| || || | ||||| Sbjct 237 GGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 >SEQ58356 Length=38410 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||| || | || ||||| || || || || || || | | || | ||||||||| Sbjct 35058 ACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCTTCC 35117 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||| || || || ||||| | ||||| || || || |||| || || || || || Sbjct 35118 AGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTATCTTGA 35177 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 || ||| ||| || ||||| || || || ||| || |||||||| ||||| || || Sbjct 35178 ATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATGGTTTTC 35237 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || || | ||||||| Sbjct 35238 CCCGTAAGGGTTTTCACGAATATCTGCATT 35267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158154579045035