Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2773 111 1e-19 seq4618 89.7 4e-13 SEQ58356 84.2 2e-11 >seq2773 Length=85211 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| ||||||||| ||||| || ||||| || ||||| || || ||||| | Sbjct 66392 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66333 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 ||||| || | || ||||||||||| || || || |||||||||||||| |||| || Sbjct 66332 AGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGG 66273 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| ||||| ||| | | | | ||||| | ||| || Sbjct 66272 ATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACC 66213 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 |||| || || ||||||| || || || || ||||| || ||||| ||| || Sbjct 66212 TCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCATTTTTCCG 66159 >seq4618 Length=10119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || ||||| || | | |||||||| || || ||||||| Sbjct 443 ACGAAAATTTG--CATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTT 386 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || || | ||||| || | || |||||||||||||||||||| || || | Sbjct 385 GGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCC 326 Query 39161 GCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 ||||||||| |||||| | | ||||||||| Sbjct 325 TCTGCTGGTCTGGTGGG-ATACCCTCTTTGTC 295 >SEQ58356 Length=38410 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||||||| | ||||| | ||| | || ||| || || ||||| || |||| Sbjct 35040 CCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGAT 35099 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || || |||||||| || ||||| || | ||| ||||| || | || Sbjct 35100 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGA 35159 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||| | | ||| ||| || ||| | | | | |||||| | |||||| Sbjct 35160 ATACCCTCTTTAT-CTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCAC 35218 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| ||||| || ||||| || || || ||||| Sbjct 35219 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429194016792167