Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2773 159 8e-34 seq4618 147 5e-30 seq2744 140 8e-28 SEQ66682 129 1e-24 seq2582 107 5e-18 seq2228 107 5e-18 SEQ37497 105 2e-17 >seq2773 Length=85211 Score = 159 bits (176), Expect = 8e-34 Identities = 170/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| ||||| || |||||||| | |||||| || | || ||| Sbjct 67298 CGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTT 67239 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| || ||||| ||||| ||||||||||| |||||||| || || || ||| Sbjct 67238 CGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCT 67179 Query 225613 TCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||| ||| |||| ||| || || ||||| || | ||| || || || Sbjct 67178 TCCTTATCCTGGAT-TTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAA 67120 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | ||||| | || | |||||| Sbjct 67119 AGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| |||||||| |||||||| | ||||| || | | |||| ||||||| Sbjct 67061 AGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATCT 67002 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| ||||||||||| |||||||| || || || ||||||||||| Sbjct 67001 TCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCC 66942 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || || || ||||| | ||| || || || || || || Sbjct 66941 TGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATGGT 66883 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | ||| || | || | ||||||| Sbjct 66882 CTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| |||||||| ||||| || |||||||| | ||||| || | || || Sbjct 66614 CGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTA 66555 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| ||||| || || || ||||| ||||| || || || ||| Sbjct 66554 CGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCT 66495 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||||||||| || ||| || |||||| || ||||| | || || ||||| Sbjct 66494 TCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAG 66435 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || |||||||| || || | |||||| | || | ||||||| Sbjct 66434 GTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||| ||||| | |||||||| | || || | |||||||||||| || Sbjct 66825 GTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTAGTTG 66766 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| ||||| ||||| |||||||| || || || ||||||||||| ||||| || Sbjct 66765 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TT 66707 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| || || || ||||| | ||| || || || || || |||||||| | Sbjct 66706 TGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGCCTG 66647 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||| | || | |||||| Sbjct 66646 TCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 125 bits (138), Expect = 2e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| | ||||||||||||||| | ||||| || | | |||| ||||||||| || || Sbjct 67509 GTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAGGGTTCGCCCATCTTCCAGTTG 67450 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| ||||| ||||| |||||||| || || || ||||||||||| ||||| || Sbjct 67449 TTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGAT-TT 67391 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| || || || ||||| | ||| || || || || || ||||| || | Sbjct 67390 TGGCTTTGACATTCTCAATTGTATCTGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAG 67331 Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714 | | ||| || | || | |||||| Sbjct 67330 TAAGAGTCTTGACAAAGATCTGCATT 67305 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| || || ||||| ||||| | |||||||| | || || | ||||||||| ||||| Sbjct 66369 GTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCAAGCTG 66310 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 ||||| ||||||||||| || || || ||||| || |||||||| ||||| || || || Sbjct 66309 TTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAAT-TT 66251 Query 225630 TTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | || || ||| ||| || || || || | || || || || || || || || || | Sbjct 66250 TAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTTTTTCCAG 66191 Query 225689 TCAAAGTTTTTATGAACACTTGCATTTT 225716 | | || || | || | |||||||| Sbjct 66190 TGAGTGTCTTCACAAATATCTGCATTTT 66163 >seq4618 Length=10119 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | ||||| |||||||||||||||| |||||| || | | || | || Sbjct 645 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 586 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| || || ||||| || | || ||||| || || ||||| || || Sbjct 585 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 526 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || || ||| ||| ||||||||||||||| | || || || | ||||| Sbjct 525 GTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 466 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| ||||| || || | ||| | |||||| Sbjct 465 AGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | ||||| || ||||||||||||| |||||| || | | || | || Sbjct 417 TCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 358 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| ||||| || || || ||||| || | || ||||| || || ||||| || || Sbjct 357 ATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 298 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || || ||| ||| ||| ||||||||||| | || || || | ||||| Sbjct 297 GTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 238 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| ||||| || || | ||| | |||||| Sbjct 237 GGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | ||||| ||||||||||| |||| |||||| || | | || | || Sbjct 189 TCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGGCC 130 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| || || ||||| || | || ||||| || || ||||| || || Sbjct 129 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTT 70 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || ||| ||| ||| ||||||||||| | || || || | ||||| Sbjct 69 GTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 10 Query 225678 CGTCTTGCC 225686 || ||||| Sbjct 9 GGTTTTGCC 1 >seq2744 Length=156805 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | ||||| |||||||||||||||| ||||| || | | || | || Sbjct 156785 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACC 156726 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| ||||| |||||||| | || ||||| ||||| ||||| || || Sbjct 156725 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTT 156666 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || || ||| ||| ||| || |||||||| | ||| || |||| || || Sbjct 156665 GTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAAT 156606 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 || ||||| || | || |||| || | ||||| || || Sbjct 156605 AGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTTCTG 156564 >SEQ66682 Length=6531 Score = 129 bits (142), Expect = 1e-24 Identities = 133/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| |||| || ||||||||| |||| ||||| ||| | ||||| Sbjct 4576 CAAATTTATAATACTATTGTTACAGCTCATGCCTTTATTATAATTTTTTTTATAGTTATA 4517 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || || |||||| Sbjct 4516 CCAATTATAATTGGTGGATTTGGAAATTGATTAGTACCATTAATATTAGGAGCCCCTGAT 4457 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || |||||||| | | || ||||||||||||||| || | || ||||| ||| Sbjct 4456 ATAGCTTTTCCTCGAATAAATAATATAAGTTTTTGAATATTGCCCCCTTCATTA 4403 Score = 96.9 bits (106), Expect = 8e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| |||||||||||||| | || ||||| ||||| |||| Sbjct 4004 TTCTGGATGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCTCCTCCTCCTGC 4063 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 |||||||||||| |||||| || |||| ||| || Sbjct 4064 TGGATCAAAAAAAGAAGTATTTAAGTTTCGATCTGT 4099 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 371401 ATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGA 371460 ||||||| || || ||||||||||| ||||| |||| || |||||| || || || | | Sbjct 4218 ATATTAATAATTGTTGTAATAAAGTTAATAGCTCCTAAAATAGAAGAAATTCCAGCTAAA 4277 Query 371461 TGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAAC 371520 || | | ||| ||||||||||| || ||| || ||||| | | ||||| ||| Sbjct 4278 TGAAGAGAAAAAATTGCTAAATCAACAGAAGAACCTTGATGAGCAATATTAGAAGATAAA 4337 Query 371521 GGCGGGTAAACTGTTCAGCCGGTTC 371545 || || ||||||||||| || |||| Sbjct 4338 GGTGGATAAACTGTTCAACCTGTTC 4362 >seq2582 Length=209522 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||||||||||| | || ||||| ||||| |||| Sbjct 118481 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCACCTCCTCCTGC 118422 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||| ||||| | ||||||||| Sbjct 118421 AGGATCAAAAAATGATGTATTTAAATTACGATCAGTTAA 118383 >seq2228 Length=414121 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||||||||||| | || ||||| || || |||| Sbjct 208108 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCACCACCTCCTGC 208049 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| | ||||| ||||| | ||||||||| Sbjct 208048 TGGGTCAAAAAATGTTGTATTTAAATTACGATCAGTTAA 208010 >SEQ37497 Length=345 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| |||||| || | | || | |||||||| ||||| || || || || || Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || | || ||||| || || ||||| || |||||||| || || ||| ||| ||| Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||||||||||| | || || || | ||||| || ||||| ||||| || || | ||| Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 225706 ACTTGCAT 225713 | |||||| Sbjct 165 ATTTGCAT 158 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | ||||| |||||||||||||||| |||||| || | | || | || Sbjct 145 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCAGAGAGTGTACGACC 86 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| |||||||| || || ||||| || | || ||||| || || ||||| || || Sbjct 85 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 26 Query 225618 GTCTTGGATCTT 225629 |||||| || || Sbjct 25 GTCTTGTATTTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191505057088346