Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 318 5e-82 seq2773 96.9 3e-15 seq4618 86.0 5e-12 seq2744 82.4 6e-11 >SEQ21942 Length=42535 Score = 318 bits (352), Expect = 5e-82 Identities = 597/874 (68%), Gaps = 5/874 (1%) Strand=Plus/Plus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || || ||||| || |||||||| ||| | || || || || || || || || | Sbjct 34607 GCTTATTTTGTGGAGTGGGGTGTTTACCCTAGAAAATTCCCAGTAGATAAGGTACCCATT 34666 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || ||| | | ||| | || ||||| ||||| || || |||||||| ||||| || ||| Sbjct 34667 CCGAATCTTACACATCTTCTTTACGGATTTATCCCCATCTGTGGCGGTGACGGAATTAAC 34726 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | ||| || || ||||| | |||||||||||||| ||| |||| || Sbjct 34727 GACAGTTTGAAAGAAATCGAAGGAAGTTTCCAAGCTTTGCAACGATCTTGCAGCGGGCGA 34786 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || || |||||||| || || |||||| |||||| || | |||||||| || || || Sbjct 34787 GAGGACTTCAAAGTTTCTATCCACGACCCTTGGGCAGCTTTACAAAAACCACAGAAGGGT 34846 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || || | |||||||| || ||||||||||||||||||||| ||||| | ||| Sbjct 34847 TTGTCCTCCTGGAACGAACCTTACAAAGGCAACTTTGGACAACTGATGTCTTTAAAACAA 34906 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 || | ||| | | || |||| || || || || || ||||| ||| | || || || Sbjct 34907 GCTAGACCTGATCTGAAGGTTCTTCCATCAATCGGGGGCTGGACATTGGCAGATCCATTC 34966 Query 109501 TATTTTATGCACGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTTA 109560 || || | | ||| || ||||||| || || | ||| ||| || || | Sbjct 34967 TACTTCTTTGATGATAAGGTAAAAAGAGATCGTTTTGTGGCATCAGTGAAAGACTTCCTC 35026 Query 109561 CAAGTGTGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAAGGGT 109620 ||| ||||||||||| ||||| || ||||||||||||||||| || || || || ||| Sbjct 35027 CAAACTTGGAAATTCTTCGACGGTGTTGACATTGATTGGGAGTTCCCTGGTGGAAAAGGT 35086 Query 109621 GCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTTAAAA 109680 || ||||| | ||||| | ||| ||| | || || | | || | ||| Sbjct 35087 GCTAATCCTAACCTCGGTGGACCAA---ATGACGGTGAAGTTTATGTCCAGCTGATGAAA 35143 Query 109681 GAGTTGCGCGCCATGTTGGACGACTTGCAAACGGCCACCAACAAAACGTACGAATTGACG 109740 ||||| || | ||| || |||| | |||| ||| || | || ||| |||| Sbjct 35144 GAGTTACGTGAAATGCTGAACGAGCTATCCACGGAGACCGGTAAGAAATATGAACTGACA 35203 Query 109741 AGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGCGCAACAA 109800 ||| ||||| || |||| ||||| || | || || |||||| | || || ||| Sbjct 35204 TCCGCTATTAGTGCTGGTTGGGATAAGATCCAAGTAGTTGATTACAGGAAAGCTCAGCAA 35263 Query 109801 TATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA-CACGGA 109859 ||| |||| | || |||||||||| ||||| || ||||| || |||||||| || Sbjct 35264 TATATGGATCATATCTTTTTAATGAGTTACGACTTTAAAGGAGCGTGGTCAAATGACACT 35323 Query 109860 CTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTACACGAC 109919 ||| || |||| || | | || || || | ||||||||||| ||| ||||| || Sbjct 35324 CTT-GGACATCAAACACCGTTATATGCACCAGCATGGAATCCAAAAGAAACCTACACAAC 35382 Query 109920 CGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTATAATTGG 109979 || | | || ||| | || || ||| ||| ||||| || |||||| |||| Sbjct 35383 TGACTTTGGAGTTAAAAATCTCTTAGCCCAAGGAGTCAACCCTAAGAAGATTATAGTTGG 35442 Query 109980 CGTAGCGATGTACGGCCGCGGCTGGACGGGCGTC 110013 |||||||||||||| || || ||||| || ||| Sbjct 35443 TGTAGCGATGTACGGTCGTGGTTGGACTGGAGTC 35476 >seq2773 Length=85211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||| || | ||| |||| ||| | || ||||| |||||||| |||||||| | | Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || |||||| | |||||| || ||| | || || | ||||||||| || Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGT- 101190 | |||||| ||||| ||||| ||| |||| | | || |||| | ||| Sbjct 66728 ATGCCTTCCTTGTCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAG--GTTCAA 66671 Query 101191 -TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | |||||||| ||||| |||| |||||| | |||||||||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/247 (70%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 100999 GTTATTACT--ATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGA 101056 ||||||| | |||||| ||||| | | ||| || | ||||||||| |||||||||||| Sbjct 67547 GTTATTATTTAATTGCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGA 67488 Query 101057 ATATTGTAATCGGCCATAGTTTTGG--AATCTTCCAATTGTTTGCCCGCATATATAAGCC 101114 || ||||| || | |||| || | |||||||| |||||| || ||| | || || | Sbjct 67487 ATGTTGTAGTCAG--ATAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTC 67430 Query 101115 TTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCG 101174 ||||||||| || | |||||| ||||| ||||| ||| |||| | | | Sbjct 67429 GCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCAATTG 67370 Query 101175 TCTCTGTGGACGTTGT--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAAT 101232 | || || | ||| | ||| | ||||| || || || || | || || | ||| || Sbjct 67369 TATC--TGAAGGTTCTACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGAT 67312 Query 101233 TTGCATT 101239 |||||| Sbjct 67311 CTGCATT 67305 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || ||||||| | | || | ||| | ||| || ||||||||||||||||| || | | Sbjct 67304 CCACCTCGCAGACGCAGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGAC 67245 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||||| ||| || || ||| | ||||| | ||||||||| || Sbjct 67244 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 67185 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | |||||| || || ||||| ||| |||| | | || || | | ||| Sbjct 67184 ATGCCTTCCTTATCCTGGATTTTGGCTTTGACATTCTCAATTGTGTC--CGAAGGTTCAA 67127 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | ||||| || |||||||| | |||||| | |||||||||||| Sbjct 67126 CTTCCAAAGTAATGGTCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 >seq4618 Length=10119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| | |||| || | || ||||||||||| |||||||| || | Sbjct 428 CCACCTCTCAATCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAG 369 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | || | |||||| | |||||||||||| | || ||||| || |||||| || Sbjct 368 AGTGTGCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 309 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | || |||||||| |||||| || |||| | | || |||| | | | Sbjct 308 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACT 249 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | || || |||||||| ||||| || || | ||||||||||| Sbjct 248 TCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/238 (68%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 101001 TATTACTATTGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATAT 101060 ||||| |||||| || | |||||| | |||| || | || ||||||||||| |||| Sbjct 665 TATTA--ATTGCCACCCCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATAT 608 Query 101061 TGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTT 101120 |||| || | | || | |||||| | || ||||| ||| | || ||||| || | Sbjct 607 TGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCT 548 Query 101121 GGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTG 101180 ||||| || | || |||||||| |||||| || |||| | | || |||| Sbjct 547 GGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTG 488 Query 101181 TGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | | ||| | || ||||||||||| ||||| || || | ||||||||||| Sbjct 487 ATGGCTCAACTTCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 >seq2744 Length=156805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| | |||| || | || ||||||||||| || ||||| || | Sbjct 156796 CCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAG-- 156739 Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 | ||| | || |||||| | || || || ||| | |||||||| || |||||| | Sbjct 156738 AGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCG 156679 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || |||||||| |||||| || |||| | | || |||| | ||| Sbjct 156678 GGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAG--GTTC 156621 Query 101190 TT--TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 | || | ||||||||||||||| || | ||| || | |||||| ||||| Sbjct 156620 TACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCAT 156570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409325492507181