Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 711 0.0 SEQ58105 109 8e-19 >SEQ17521 Length=26855 Score = 711 bits (788), Expect = 0.0 Identities = 1238/1783 (69%), Gaps = 32/1783 (2%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | |||||| || |||| | | ||| ||||| ||||||| ||| ||||| || Sbjct 4001 TTATCTACTGTAAATTGGATTGCATTTGCTGCAGGTTTGGTACGTAAATAATACATGCCT 3942 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||||||||||| |||| | || ||||| ||| |||||||| |||| | || Sbjct 3941 GTTTTTAGACCCATTTTCCACGCATAAAAATGTATGGACGTCAGTTTACCATAATTTGGT 3882 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 || |||| ||| || || | ||||||||||| || || || || ||||||||||| ||| Sbjct 3881 TCAGCTACATGGATGTTAAAAGACTGACTTTGGTCTATAAATGCACCTCTATCAGCAGCC 3822 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 || | ||| | || || || ||||||||| | || || | | | | | ||||| Sbjct 3821 ATCTGAATAGTAGTTTTCACAGAAATTTCCCATACTGTCTTATACAAATCTCTAATATCT 3762 Query 77013 TCTGGA--AGGTT-TGTATTTTGAATGGAACCACCA-TCTGATATAATTGTATTCTTTAT 77068 | ||| || || |||| |||| |||||| | | ||| | ||| ||| || || Sbjct 3761 TTGGGAATAGATTCAATATTCTGAACTGAACCATTATTATGA-AGAATAAGATTTTTCAT 3703 Query 77069 ATCATCATTCCAC-AATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTT 77127 ||||| | |||| ||| | || | || ||| |||| | |||||| | || || | || Sbjct 3702 GTCATCGTCCCACAAATCTGCT-TGAGTCAAATCTCTCAAAAGATGATGGTTCACAACTT 3644 Query 77128 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATT 77187 |||||||||| || ||||||| | ||| ||||| ||| ||||||| | |||| Sbjct 3643 GAAATTCTCCTGATAATACTCGTCTTTGGTATATATTTGAAGTAAATGGTTCAAAGGATT 3584 Query 77188 CATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTAT 77247 |||| || || | || || || ||||| || ||||||||||| |||| | | | || Sbjct 3583 CATTATTGCCAAGTATCTGTGCCGTAGATGCCGTTGGCATAGGCGCCAGTAGCAGAGAAT 3524 Query 77248 TTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAG 77307 | | | |||||| | ||||| ||||| ||| ||||||||| ||||| | | Sbjct 3523 TACGAATTCCATGTTTAGCTATTTTTTCTTTAAGAGCAACCCAATCCCAGAGATCAGTGG 3464 Query 77308 GTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATG 77367 | || ||| | ||| |||| | ||| || | ||| || || | ||||| Sbjct 3463 GCGTCTTATTCCACATATCAAATTGCAAAATCCCTTGGCTAACAGGACTACCTTCATATG 3404 Query 77368 TTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAA 77427 |||| ||| ||| | || |||| |||||| || |||||||| ||||||||||| | Sbjct 3403 AACTATAAACTCCCTCTTTCTCCGCTAATTCACAGCTAGCTTCCAAAGCTCCGTAATAGA 3344 Query 77428 TTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTA 77487 | || || || |||| | || | ||||| ||| ||| | || || | | Sbjct 3343 TAGTCTCAAATATCTGTTGGTTTAACAACAATGCTTTTTCACTTTCATAAGGGTAGCGCA 3284 Query 77488 AAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTAT 77547 || | ||||||||| ||||| || || ||||||||||| || |||||||||| | ||| Sbjct 3283 TCAGCACAAAGGCATCAGCTAAACCTTGGACTCCAATACCTATTGGTCTATGTCGCATAT 3224 Query 77548 TGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTT- 77606 |||| ||||||||||||||| ||||||||||| | |||||||||||||| || ||| Sbjct 3223 TGGAGTTTTTAGCTTCTGGAACTGGATAATAATTGACATCTATAATTTTATTTAGGTTTT 3164 Query 77607 --CTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA---TCTTCCATCTA 77661 | | || | | || || || |||| || ||||| | ||| |||| Sbjct 3163 GGGTTATAATTTTTGTA---ACTTCTTTTAACTTTTCAAAATTGTACGTTCTATCATCAT 3107 Query 77662 TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCAT-TAGCGTTG 77720 | |||||||| |||||||| ||||| |||| |||||| |||||||| |||| || | | Sbjct 3106 TTACAAACATATTCAAAGCAATAGAAGCTAAATTACATACTGCTACTTCATCTACTGAT- 3048 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | |||| || ||| || |||||||||||||||||||| || || || ||||||| || Sbjct 3047 GTGTATTCTACTATTTCTGTACATAGATTACTACATTTAATTGTTCCTAGATTTTTCTGA 2988 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 || |||||| | || ||||| || || || | || || ||||| || ||||||| ||| Sbjct 2987 TTACTCTTTCTGTTACATGAATCTTTGTATAACATGAATGGAGTGCCTGTTTCAACTTGT 2928 Query 77841 GATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATT--TGTATCGCCTCT 77898 | ||| | ||||| ||||| | ||| ||||||| | | || ||| | | Sbjct 2927 GCTTCTACAATAGCCTTCCATAAAACTTGTGCTTTTA--CTTGTTTAACAAATCTTTTTT 2870 Query 77899 CTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAG 77958 | | ||||| | ||| || |||||| || ||||||||| ||| |||| |||| Sbjct 2869 CATTCTCATACTTTTCATAAAGGGCTTCAAACTCTTCTCCCCAACAATCTGCCAAACCAG 2810 Query 77959 GGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGA 78018 | || |||| || |||||||| ||| | ||| || | ||||| ||||||||| | Sbjct 2809 GACAGTCATGGGGACACATCAAACTCCAATTTTCATTTTTTTCAACTCTTTTCATAAACA 2750 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTAT 78078 ||| |||||||||| |||| ||| | || | | || | |||||| || || |||| Sbjct 2749 AATCTGGTATCCATAAAGCATAAAACAATTCCCTAGCTCGAACTTCTTCTTTACCAGTAT 2690 Query 78079 TCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCA 78138 ||||||| ||||| | |||||| | | ||| |||||||||||||||| ||||| || | Sbjct 2689 TCTTTTTCAGATCTAAAAACTCAAACACATCTGAATGCCATGGTTCTAAATATACAGCAA 2630 Query 78139 TAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTC 78198 | || || || || ||||| || ||||||| ||||||||| ||| | ||||| |||| Sbjct 2629 ATGCCCCTGGACGCTTGTTACCACCTTGATCTACATATCTGGCTGTGCTGTTATATACTC 2570 Query 78199 TCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTG 78258 | |||||||| | || || || ||| |||||||| |||| ||| | | || | | Sbjct 2569 TTAACATTGGGACAAGTCCATTTGATACACCATTTGTGCCAGCTATACATGTACCTTTAG 2510 Query 78259 CGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | || ||| | || | || ||| || || ||||| |||||||| | || Sbjct 2509 CTCGGATA----CAGTGAACATGAAGCCCAATGCCACCTGCAGATTTAGATATCAAGGCA 2454 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAA 78373 || |||||| || || || || ||||| ||||||||||| |||| | || |||||| Sbjct 2453 CATTGTTTCAGAGTGTCATATATTCCCTCAATACTGTCATCTTTCATGGCCAATAAGAAA 2394 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 || | |||| |||| | ||| | ||| |||||| || ||| || || || Sbjct 2393 CAAGAT-GACAATTGAGGTCTTGGAGTAGCAGCAGAAAATAAAGTAGGACTGGCGTGAGT 2335 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 || | || ||||| | || |||||| || | ||| ||||| || ||||| | ||| Sbjct 2334 GAAATACTTCTCAGACAATAAATTGTAGGTGTTAATTGCTGAATCAATGTCTTCTCCATG 2275 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCA 78536 || || | ||||||||||| | |||||| || ||||| ||| Sbjct 2274 TATACCAATAGCTACACGCATTAGCATATGTTGTGGTCTCTCA 2232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 78731 TTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCT 78790 || |||||| | | ||| ||||||| ||||||||||||| |||||||| |||||||| Sbjct 447 TTTCATTACCTGA--AAAGTGTTTTTTAGTTTCCTTGTGTAAATTAGATATGGCTATTCT 390 Query 78791 TGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGC 78850 || || || | |||||| |||||||| | |||| ||||| ||| | || || || Sbjct 389 AGCTGCAAGTACAGCATAGTCAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGC 330 Query 78851 TAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 || |||| | ||| | ||| || || || ||| | ||| ||||||||||| Sbjct 329 CAAGTTATCAAGCTCAACAGTCGTCACTCCTGAATACAAACCTCCAATAACTTTCA 274 >SEQ58105 Length=99015 Score = 109 bits (120), Expect = 8e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48391 TTTCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| ||| || ||| || || ||||| || |||||||| ||||||| || Sbjct 16476 TTTCTTTGGAATCACGAATGTATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACAT 16417 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 |||| || || || || || || || || |||| || || || | || ||||| Sbjct 16416 TTTCCATGGCTATTTGGAACCCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTG 16357 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 ||||||| || | | ||| ||||| || ||||||||| |||||||||||||||| | Sbjct 16356 AAAATCGCTCCACTAGATTTTCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAA 16297 Query 48571 CATGTTTAATAAAAT 48585 | |||||||| |||| Sbjct 16296 CGTGTTTAATGAAAT 16282 Score = 95.1 bits (104), Expect = 2e-14 Identities = 152/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||| | || ||| || || | ||| ||||| |||||||| || || Sbjct 17317 TCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCTTT 17258 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | |||||| || | || ||| || || || || || || ||||| || |||||||| Sbjct 17257 AACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATGCT 17198 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 || | ||||| | | || ||| | ||||| || | ||||| || ||| Sbjct 17197 ACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTGCC 17138 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||||| || |||||||||| ||||||||||||||||| Sbjct 17137 TTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 17100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||||| ||| ||||||||| | |||||||| || || || |||||||| ||||| | | Sbjct 16168 TTTGATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACATTTCC 16109 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTA 48725 || ||||| || ||||| || || |||||||||||| Sbjct 16108 CAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694085634225760