Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value SEQ17521 668 0.0 SEQ58105 105 1e-17 seq5442 86.0 9e-12 >SEQ17521 Length=26855 Score = 668 bits (740), Expect = 0.0 Identities = 1198/1739 (69%), Gaps = 12/1739 (1%) Strand=Plus/Minus Query 75397 TGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 75456 ||| ||||| ||||||| ||| ||||| || ||||||||||||| |||| | || || Sbjct 3972 TGCAGGTTTGGTACGTAAATAATACATGCCTGTTTTTAGACCCATTTTCCACGCATAAAA 3913 Query 75457 ATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACT 75516 ||| ||| || ||||| |||| | || || |||| ||| || || | |||||||| Sbjct 3912 ATGTATGGACGTCAGTTTACCATAATTTGGTTCAGCTACATGGATGTTAAAAGACTGACT 3853 Query 75517 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 75576 ||| || || || || ||||||||||| ||||| | ||| | || || || |||||| Sbjct 3852 TTGGTCTATAAATGCACCTCTATCAGCAGCCATCTGAATAGTAGTTTTCACAGAAATTTC 3793 Query 75577 CCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGA--AGATT-TGTATTTTGAATGGA 75633 ||| | || || | | | | | ||||| | ||| ||||| |||| |||| || Sbjct 3792 CCATACTGTCTTATACAAATCTCTAATATCTTTGGGAATAGATTCAATATTCTGAACTGA 3733 Query 75634 TCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || || | | ||| ||| || || ||||| | |||||| | | | || || Sbjct 3732 ACCATTATTATGAAGAATAAGATTTTTCATGTCATCGTCCCACAAATCTGCTTGAGTCAA 3673 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | |||| | |||||| | || |||| |||||||||||| || ||||||| || ||| Sbjct 3672 ATCTCTCAAAAGATGATGGTTCACAACTTGAAATTCTCCTGATAATACTCGTCTTTGGTA 3613 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||||| ||| ||||||| | |||||||| || || | || || || || || || Sbjct 3612 TATATTTGAAGTAAATGGTTCAAAGGATTCATTATTGCCAAGTATCTGTGCCGTAGATGC 3553 Query 75814 AGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTT 75873 || |||||||| |||| | | | ||| | | |||||| | ||||| ||||| Sbjct 3552 CGTTGGCATAGGCGCCAGTAGCAGAGAATTACGAATTCCATGTTTAGCTATTTTTTCTTT 3493 Query 75874 TAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||| ||||||||| ||||| | || || ||| | ||| |||| | ||| Sbjct 3492 AAGAGCAACCCAATCCCAGAGATCAGTGGGCGTCTTATTCCACATATCAAATTGCAAAAT 3433 Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 || | |||| || || | ||||| ||| || || || || |||| ||| Sbjct 3432 CCCTTGGCTAACAGGACTACCTTCATATGAACTATAAACTCCCTCTTTCTCCGCTAATTC 3373 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCT-TCTTATTAAGATCTT 76052 || || || || || || |||||||| || || || || |||| | |||| | | Sbjct 3372 ACAGCTAGCTTCCAAAGCTCCGTAATAGATAGTCTCAAATATCTGTTGGTTTAACAAC-A 3314 Query 76053 GCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAA 76112 |||| ||| ||| |||| || | | || | ||| ||||| |||| || || | Sbjct 3313 ATGCTTTTTCACTTTCATAAGGGTAGCGCATCAGCACAAAGGCATCAGCTAAACCTTGGA 3254 Query 76113 CTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAAT 76172 |||||||||| || |||||||||| | ||||||| ||| ||||||||||| || |||| Sbjct 3253 CTCCAATACCTATTGGTCTATGTCGCATATTGGAGTTTTTAGCTTCTGGAACTGGATAAT 3194 Query 76173 AATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTT 76232 |||| | ||||||||||||||| || ||| | | | ||| || || |||| | Sbjct 3193 AATTGACATCTATAATTTTATTTAGGTTTTGGGTTATAATTTTTGTAACTTCTTTTAACT 3134 Query 76233 TGAGAAAATCAAATTTTC---CATCTATCACAAACATATTAAGAGCTATAGATGCTAGAT 76289 | ||||| | ||| |||| | ||||||||||| | ||| ||||| |||| || Sbjct 3133 TTTCAAAATTGTACGTTCTATCATCATTTACAAACATATTCAAAGCAATAGAAGCTAAAT 3074 Query 76290 TACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTAC 76349 |||| || ||||| |||| | | |||| || ||| || || ||||||||||||| Sbjct 3073 TACATACTGCTACTTCATCTACTGATGTGTATTCTACTATTTCTGTACATAGATTACTAC 3014 Query 76350 ACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAA 76409 | || || ||||| ||||||| || || |||||| |||||||||| || || || | | Sbjct 3013 ATTTAATTGTTCCTAGATTTTTCTGATTACTCTTTCTGTTACATGAATCTTTGTATAACA 2954 Query 76410 CAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 76469 || ||||| || ||||||| |||| ||| | ||||| ||||| | ||| |||| Sbjct 2953 TGAATGGAGTGCCTGTTTCAACTTGTGCTTCTACAATAGCCTTCCATAAAACTTGTGCTT 2894 Query 76470 TTA-TTATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 ||| || | | ||| || || | ||||| | | ||| | |||||| || Sbjct 2893 TTACTTGTTTA-ACAAATCTTTTTTCATTCTCATACTTTTCATAAAGGGCTTCAAACTCT 2835 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 ||||||||| ||| ||||||||||||| |||| ||||||||||| ||| | || Sbjct 2834 TCTCCCCAACAATCTGCCAAACCAGGACAGTCATGGGGACACATCAAACTCCAATTTTCA 2775 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 | || | ||| | ||||||||| | ||| |||||||||| |||| ||| | || | Sbjct 2774 TTTTTTTCAACTCTTTTCATAAACAAATCTGGTATCCATAAAGCATAAAACAATTCCCTA 2715 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | || | |||||| || || ||||||||||| ||||||| ||||| | | ||| ||| Sbjct 2714 GCTCGAACTTCTTCTTTACCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCTGAA 2655 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||||||||||| ||||| || | | || || || || ||||| || ||||||| | Sbjct 2654 TGCCATGGTTCTAAATATACAGCAAATGCCCCTGGACGCTTGTTACCACCTTGATCTACA 2595 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 |||||||| ||| | ||||| ||||| |||||||| | || || || ||| ||||||| Sbjct 2594 TATCTGGCTGTGCTGTTATATACTCTTAACATTGGGACAAGTCCATTTGATACACCATTT 2535 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 || |||| ||| | | || || || ||| || | || || || || ||| Sbjct 2534 GTGCCAGCTATACATGTACCTTTAGCTCGGATACAGTGAACATGAAGCCCAATGCCACCT 2475 Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 || |||||| || | ||||| |||||| |||||||| || ||||| ||||| ||| Sbjct 2474 GCAGATTTAGATATCAAGGCACATTGTTTCAGAGTGTCATATATTCCCTCAATACTGTCA 2415 Query 76949 TCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 77007 || |||| | || |||||| || | |||| |||| | ||| | ||| ||| Sbjct 2414 TCTTTCATGGCCAATAAGAAACAAGAT-GACAATTGAGGTCTTGGAGTAGCAGCAGAAAA 2356 Query 77008 CAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAAC 77067 || |||||| || |||||||| | || ||||| | || |||||| || | ||| | Sbjct 2355 TAAAGTAGGACTGGCGTGAGTGAAATACTTCTCAGACAATAAATTGTAGGTGTTAATTGC 2296 Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTC 77126 || || || || | ||| || || | ||| |||||||| | |||||| || |||| Sbjct 2295 TGAATCAATGTCTTCTCCATGTATACCAATAGCTACACGCATTAGCATATGTTGTGGTC 2237 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 77346 GtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGT 77405 ||||||| ||||||||||||| ||| |||| |||||||||||| || || | ||||||| Sbjct 429 GTTTTTTAGTTTCCTTGTGTAAATTAGATATGGCTATTCTAGCTGCAAGTACAGCATAGT 370 Query 77406 CAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAG 77465 ||||||| | |||| ||||| ||| | || || || || |||| | || | || Sbjct 369 CAGGATGGTCAATAGTCATTGTGGCAGCTGTCTCAGCAGCCAAGTTATCAAGCTCAACAG 310 Query 77466 TAGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 77501 | || ||||| ||| | ||| ||||||||||| Sbjct 309 TCGTCACTCCTGAATACAAACCTCCAATAACTTTCA 274 >SEQ58105 Length=99015 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 46900 TATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAAT 46959 ||||| || ||||| || |||||||| || |||| ||||| || || || || || Sbjct 16456 TATGTGTCAATTAATAGGGAGTACATTTCAGAGTGAACATTTTCCATGGCTATTTGGAAC 16397 Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019 || || || |||| || ||||||| || |||||| ||||||| || | ||| Sbjct 16396 CCATAGAAGAATCTGGCCTCAGTAACTTGAACCTCTTGTGAAAATCGCTCCACTAGATTT 16337 Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 47079 ||||| || ||||||||| |||||||||||||| | || |||||||| |||| | | Sbjct 16336 TCATTGACAATTCCATCAGATGCAGCAAAAAATGCTAGAACGTGTTTAATGAAATGTCTC 16277 Query 47080 TCA 47082 ||| Sbjct 16276 TCA 16274 Score = 104 bits (114), Expect = 3e-17 Identities = 155/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||| | || ||| || || | |||||||| ||||||||||| || Sbjct 17317 TCATCTCTTGAAATAAGCTCATTACTGAAAGTCAAACCAGGCATGAGTCCACGCTTCTTT 17258 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | |||||| |||| || ||| || || || || || || ||||| || || ||||| Sbjct 17257 AACCAAAAGATAGAAGCAAAACTGCCTGAGAAAAAAATACCCTCTACCGCTGCAAATGCT 17198 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATT--ATG-AATCCACCTTTGAGCCCAATCAGCC 46830 |||| | ||||| | | ||| || || |||||| | | ||||| || ||| Sbjct 17197 ACAATACGTTCTCCAAATGTTGCAGTTTTGCTTGCAATCCATTGTAGGGCCCAGTCTGCC 17138 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || || || |||||||||| ||||||||||||||||| Sbjct 17137 TTCTTTTTAACACAAGGCAAAGTTTCTATAGCATTAAA 17100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 ||||||| ||| ||||||||| | ||||| || || || || |||||||| ||||| | | Sbjct 16168 TTTGATAAATCCACTTCTTCAACAGTCCAAAAGGAAGCTTCGGCTTTTTTGTACATTTCC 16109 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTA 47214 || ||||| |||| ||||| ||||| |||||||||||| Sbjct 16108 CAAATATCTGGATACTGGATAGGAAATATAACAAATCTA 16070 >seq5442 Length=246257 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 44363 TCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTACTATCT-AGAGATTG--TACTTC 44419 ||| ||||| ||||| ||| | | |||| || ||| ||| | |||||| |||||| Sbjct 104773 TCCTGTTGAACCAAACCCTCCATCTGCTCTTTTAGTA---TCTGAAAGATTGGCTACTTC 104829 Query 44420 CTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATT 44479 | || || || || || || || | | ||||||||||| |||||||||||| | || Sbjct 104830 CATCAGCTCGGGGTAGTAAATTTTTTCACATATTAGTTGAGCAATTCTATCACCTTTTTT 104889 Query 44480 TATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATC 44539 | |||| ||| | | | ||||| || | ||||||| || || |||||||| Sbjct 104890 AACCACAAAGTCATCATCTGAGTGATTGAATAATACAACTCCAACATTTCCTCTATAATC 104949 Query 44540 TTCATCTATTACTCCACCT 44558 ||||||||| || ||| || Sbjct 104950 TTCATCTATGACACCAGCT 104968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712335900482880