Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2744 143 6e-29 seq2773 141 2e-28 seq4618 134 3e-26 SEQ37497 114 3e-20 SEQ58356 109 1e-18 >seq2744 Length=156805 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| || || || ||||||||||||||||| || | | || | || Sbjct 156785 TCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACC 156726 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || || || || |||||||||||||||||||| | || ||| || || || Sbjct 156725 ATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCTTT 156666 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| || ||| | || | |||||||| ||||| || || ||||| Sbjct 156665 GTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAAT 156606 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||||| ||||| ||||| || || | |||||| || Sbjct 156605 AGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >seq2773 Length=85211 Score = 141 bits (156), Expect = 2e-28 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| |||||||| ||||||||||| |||||||| || | | |||| |||||| Sbjct 67062 GAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAGAGGGTTCGCCCATC 67003 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| || || |||||||| | ||| ||||| | | ||| |||||||| Sbjct 67002 TTCCAGTTGCTTT--CCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTG 66945 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || || ||||| ||| ||| |||| | | |||||| || ||||| | |||||| Sbjct 66944 TCCTGGATTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATG 66885 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || |||||||| || |||| |||||| Sbjct 66884 GTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCATT 66849 Score = 138 bits (152), Expect = 3e-27 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||| ||||||||||| || ||||| || | | |||| ||||||| Sbjct 67289 AGTACAAGGTGAAGAGTCGACTCTTTTTGAATATTGTAGTCAGACAGGGTTCGCCCATCT 67230 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || |||||||| | ||| ||||| | | ||| |||||||| | Sbjct 67229 TCCAGTTGCTTT--CCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTAT 67172 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || ||||| ||||||| |||| | |||| ||| || ||||| | |||||| | Sbjct 67171 CCTGGATTTTGGCTTTGACATTCTCAATTGTGTCCGAAGGTTCAACTTCCAAAGTAATGG 67112 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | |||||||| || || ||||| || | ||||| Sbjct 67111 TCTTGCCCGTTAGTGTTTTCACAAAAATTTGCAT 67078 Score = 125 bits (138), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| ||||||||||| | | || | ||||||||| | Sbjct 66372 CAAG-TGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCAA 66314 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | |||||| ||||||||||| | |||||| || | | ||| ||||| || || |||| Sbjct 66313 GCTGTTTCCCTGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCTTCTTTGTCCTGAA 66254 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | | || || ||| || || | || || ||||| | Sbjct 66253 TTTTAGCTTTTACATTTTCAATTGTATCCGATGGCTCAACCTCCAAGGTTATGGTTTTTC 66194 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 | ||||| |||||||| || | ||||||||| || Sbjct 66193 CAGTGAGTGTCTTCACAAATATCTGCATTTTTCC 66160 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || ||||| ||||||||||| | | || | ||||||||||| Sbjct 66828 CAAG-TGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGACAGTGTACGCCCATCTTCTA 66770 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| || | ||| ||||| | | ||| |||||||| || || | Sbjct 66769 GTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGGATGCCTTCCTTGTCCTGGA 66710 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | | |||||| || ||||| | ||||||||| |||| Sbjct 66709 TTTTGGCTTTAACATTCTCAATTGTATCTGAAGGTTCAACTTCCAAAGTAATAGTCTTGC 66650 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || ||||| || | ||||| Sbjct 66649 CTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| |||||||||||||||||||| |||||||| || | | || | |||||| Sbjct 66605 AGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGACAGGGTACGTCCATCT 66546 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || |||| |||||||||| | ||| ||||| || ||| Sbjct 66545 TCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTCCGGAGGGATGCCTTCTTTGTCT 66486 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| || || | || | | ||||| ||||||||| | ||||| || Sbjct 66485 TGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGGCTCTACTTCTAAGGTAATCGTC 66426 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||| || || |||| |||||| Sbjct 66425 TTACCTGTGAGAGTTTTAACAAAGATTTGCATT 66393 >seq4618 Length=10119 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| || || | ||| || || || ||||||||||| ||||| || | | || Sbjct 651 CCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGT 592 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| |||||||||||||| | | ||| || Sbjct 591 GCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACC 532 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 || || ||||||||||| || ||| | || | | ||||||| ||| |||||||| Sbjct 531 CTCTTTGTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAG 472 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| ||||||||||| || | ||||| ||||| | ||||| Sbjct 471 AGTGATAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| || ||||| ||||||||||| ||||| || | | || | || Sbjct 417 TCTCAGTACCAAATGGAGTGTAGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCC 358 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || || ||||| |||||||||||||| | | ||| || || || Sbjct 357 ATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTT 298 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||||||||| || ||| | || | | ||||||| ||| ||||||||||| || Sbjct 297 GTCTTGAATTTTGGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 238 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || | ||||| ||||| | ||||| Sbjct 237 GGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 202 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| || || || ||||| ||||| ||||| || | | || | || Sbjct 189 TCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTAGTCCGAGAGTGTGCGGCC 130 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || || ||||| ||||| |||||||||||||| | | ||| || || || Sbjct 129 ATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATACCCTCTTT 70 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| ||||| || ||| | || | | ||||||| ||| ||||||||||| || Sbjct 69 GTCTTGGATTTTAGCCTTAACATTTTCAATGGTGTCTGATGGCTCAACTTCAAGAGTGAT 10 Query 152069 AGTTTTGCC 152077 |||||||| Sbjct 9 GGTTTTGCC 1 >SEQ37497 Length=345 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 |||||||| ||||| || | | || | |||||||| || ||| ||||| || || Sbjct 345 TTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCAAGCTGTTTGCCGGCAAAAATG 286 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 |||||||||||||| | | ||| || || || ||||||||||| || ||| | || Sbjct 285 AGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCA 226 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | ||||||| ||| ||||||||||| || |||||||| || | ||||| ||||| Sbjct 225 ATGGTGTCTGATGGCTCAACTTCAAGAGTGATGGTTTTGCCAGTCAAGGTCTTGACGAAA 166 Query 152097 ACCTGCAT 152104 | ||||| Sbjct 165 ATTTGCAT 158 >SEQ58356 Length=38410 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| | |||||||| || || || ||||| |||| ||| || | |||||||| Sbjct 35058 ACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCTTCC 35117 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || || ||||| | | ||||| |||| | || || || || |||||| Sbjct 35118 AGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTATCTTGA 35177 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 |||||| ||| ||| | || | | || || ||| || || || || || ||||| Sbjct 35178 ATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATGGTTTTC 35237 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || |||||||| | ||||||| Sbjct 35238 CCCGTAAGGGTTTTCACGAATATCTGCATT 35267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152827966407689