Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value SEQ21942 196 3e-45 seq2773 123 2e-23 seq2744 109 4e-19 SEQ58356 107 1e-18 seq4618 95.1 9e-15 >SEQ21942 Length=42535 Score = 196 bits (216), Expect = 3e-45 Identities = 633/978 (65%), Gaps = 11/978 (1%) Strand=Plus/Minus Query 5947 ATGTCTTTGTAGTCCACGACACCGTTTTCCCAGGAACCCTTTACG-GGACCCGTGGCAGT 6005 || ||| ||||||| || ||||| | | ||| | |||||||| ||||| ||||| Sbjct 35568 ATTTCTCTGTAGTCGACCACACCATCCTGCCACGT-CCCTTTACAAGGACCTGTGGCTAC 35510 Query 6006 GCCTGTGAAGGGATTGTTGTTGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACAT 6065 || ||||| ||||| || | ||| ||| |||| |||| ||| || | |||||||| Sbjct 35509 TCCAGTGAAAGGATTATTATCTGTGTAGTTTTGGACTCCAGTCCAACCACGACCGTACAT 35450 Query 6066 GGCCACGCCCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGC 6125 || || || || | | || || ||||| || | || | || || || | Sbjct 35449 CGCTACACCAACTATAATCTTCTTAGGGTTGACTCCTTGGGCTAAGAGATTTTTAACTCC 35390 Query 6126 GAACGCGGTGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAG 6185 || | || ||||| |||| | || ||||||| || || || | || || || | Sbjct 35389 AAAGTCAGTTGTGTAGGTTTCTTTTGGATTCCATGCTGGTGCATATAACGGTGTTTGATG 35330 Query 6186 TCCCAGATCGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATC 6245 ||| ||| | || ||||| ||||| || || ||||| |||| | || |||||||| Sbjct 35329 TCCAAGAGTGTCATTTGACCACGCTCCTTTAAAGTCGTAACTCATTAAAAAGATATGATC 35270 Query 6246 CAGATACTCCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGAT 6305 || ||| | ||| | | ||| || || || | || || || | || | || || Sbjct 35269 CATATATTGCTGAGCTTTCCTGTAATCAACTACTTGGATCTTATCCCAACCAGCACTAAT 35210 Query 6306 GGCGCTTGTGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGACCGTCCAGCATGGACCT 6365 ||| ||| || ||| || ||| || || || ||| |||||| | Sbjct 35209 AGCGGATGTCAGTTCATATTTCTTACCGGTCTCCGTGGATAGCTCGTTCAGCATTTCACG 35150 Query 6366 GAGGTCGCCCAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGG 6425 | || || ||| ||| | ||||| || | || | | ||| Sbjct 35149 TAACTCTTTCATCAGCTGGACATAAACTTCACCGTCATTTGGTCCA---CCGAGGTTAGG 35093 Query 6426 ATTGGCTCCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCA 6485 ||| || || || || || || || |||||||| ||||| || ||||||||||| ||||| Sbjct 35092 ATTAGCACCTTTTCCACCAGGGAACTCCCAATCAATGTCAACACCGTCGAAGAATTTCCA 35033 Query 6486 AGTTTCCAGAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAG 6545 ||||| || || |||| || | || || | |||||| | | | || | | Sbjct 35032 AGTTTGGAGGAAGTCTTTCACTGATGCCACAAAACGATCTCTTTTTACCTTATCATCAAA 34973 Query 6546 CTGGTAAAAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGCGG 6605 ||| || ||||| || ||||| || ||||| || || || | |||||| || Sbjct 34972 GAAGTAGAATGGATCTGCCAATGTCCAGCCCCCGATTGATGGAAGAACCTTCAGATCAGG 34913 Query 6606 ATTGTGTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTACATTTC---CGAGTA 6662 | || | || | ||| || || || || || || ||||| ||| | || | Sbjct 34912 TCTAGCTTGTTTTAAAGACATCAGTTGTCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGA 34853 Query 6663 GGCCTCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTT 6722 || | | |||||||| |||||||||| || |||| ||||| || || || || Sbjct 34852 GGAC---AAACCCTTCTGTGGTTTTTGTAAAGCTGCCCAAGGGTCGTGGATAGAAACTTT 34796 Query 6723 GAAGTCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTT 6782 |||||| ||||| || ||| ||||| |||| ||||| ||| || | | ||| Sbjct 34795 GAAGTCCTCTCGCCCGCTGCAAGATCGTTGCAAAGCTTGGAAACTTCCTTCGATTTCTTT 34736 Query 6783 CAGAGCGTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGT 6842 || | |||||| || || || || || || ||||| | |||||||| || |||||||| Sbjct 34735 CAAACTGTCGTTAATTCCGTCACCGCCACAGATGGGGATAAATCCGTAAAGAAGATGTGT 34676 Query 6843 GAGATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCAC 6902 ||||| |||||||| | | || | || || | ||| |||||||||||||||||| Sbjct 34675 AAGATTCGGAATGGGTACCTTATCTACTGGGAATTTTCTAGGGTAAACACCCCACTCCAC 34616 Query 6903 GAAGTAAGCTCCGATGAC 6920 || |||||||||| ||| Sbjct 34615 AAAATAAGCTCCGACGAC 34598 >seq2773 Length=85211 Score = 123 bits (136), Expect = 2e-23 Identities = 170/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | | || |||||||| ||| ||| ||||| |||||||| Sbjct 67083 TTGCATACCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTA 67024 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | ||| ||| | || ||||| ||||| || |||||||| | ||||| || || Sbjct 67023 GTCAGAGAGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTC 66964 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||||| ||| || || |||| || ||| | || || || | | Sbjct 66963 TGGAGGGATGCCTTCCTTGTCCTGGATTTTG-GCTTTAACATTCTCAATTGTATCTGAAG 66905 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| ||||| |||||||| || || ||||| || ||||||||||| Sbjct 66904 GTTCAACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATTTGCAT 66850 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| | | || |||| ||||||||| |||||||| |||||||| Sbjct 66399 TTGCATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTA 66340 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| ||| | || || ||||| ||||| || ||||| | |||||||||||| Sbjct 66339 ATCAGACAGTGTACGCCCATCTTCAAGCTGTTTCCCTGCGAAGATAAGACGCTGCTGATC 66280 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | |||||| || ||| || || || | || | || || || | | Sbjct 66279 GGGAGGGATACCTTCTTTGTCCTGAATTTTAGCTTTTACATTTTCAATTGTATCCGATGG 66220 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||| || || || ||||| ||||| |||||||| || || ||||| Sbjct 66219 CTCAACCTCCAAGGTTATGGTTTTTCCAGTGAGTGTCTTCACAAATATCTGCAT 66166 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| | | || |||| ||||||||| |||||||| |||||||| Sbjct 66855 TTGCATTCCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTA 66796 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| ||| | || || || || || || |||||||| | ||||| || || Sbjct 66795 ATCAGACAGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTC 66736 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||||| ||| || || |||| || ||| | || || || | | Sbjct 66735 TGGAGGGATGCCTTCCTTGTCCTGGAT-TTTGGCTTTAACATTCTCAATTGTATCTGAAG 66677 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| ||||| ||||| || || || || ||||| || |||||||| Sbjct 66676 GTTCAACTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| ||| | || || |||||||| || ||| ||||| |||||||| Sbjct 66627 TTGCATACCACCTCGCAGACGCAGAACAAGGTGAAGAGTAGACTCTTTTTGAATGTTGTA 66568 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | || || | || ||||| ||||| || ||||| || | || ||||| || Sbjct 66567 GTCAGACAGGGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATGAGCCGTTGCTGGTC 66508 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | ||||| || || || ||| ||| | || | || || || | | Sbjct 66507 CGGAGGGATGCCTTCTTTGTCTTGGATTTTCGCCTTTACGTTTTCGATAGTATCTGATGG 66448 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | ||||||||||| || ||||| || || || ||||||||||| Sbjct 66447 CTCTACTTCTAAGGTAATCGTCTTACCTGTGAGAGTTTTAACAAAGATTTGCAT 66394 >seq2744 Length=156805 Score = 109 bits (120), Expect = 4e-19 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||| |||| || || ||| || |||||||||||||| Sbjct 156803 TTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTA 156744 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | |||| || | || || |||||||| || |||||||| | | |||||| || Sbjct 156743 GTCAGAGAGTGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTC 156684 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||| || || || || || ||| | || | || ||||| | | Sbjct 156683 TGGCGGGATACCCTCTTTGTCTTGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGG 156624 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTG 44343 ||| ||||| | ||||| || || || ||||| ||||| || || || |||||| | || Sbjct 156623 TTCTACCTCTAGGGTAATAGTTTTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTTCTG 156564 Query 44344 AATGAAAA 44351 || |||| Sbjct 156563 AAACAAAA 156556 >SEQ58356 Length=38410 Score = 107 bits (118), Expect = 1e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 44103 ATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGT 44162 |||| | || ||||| | |||||||| || || | || |||||| || || |||| Sbjct 35032 ATTTTTTACCTCCTCTTAACCTCAACACAAGATGCAATGTAGACTCCTTCTGAATATTGT 35091 Query 44163 AATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 | |||| | | ||| | || |||||||| || || |||||||||||||| ||||||| Sbjct 35092 AGTCGGATAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGAT 35151 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCG 44281 | | || | ||| | |||| | | | || ||| || | || | || || |||| | Sbjct 35152 CCGGTGGAATACCCT-CTTTATCTTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAG 35210 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||||| | || || || || ||||| ||||| |||||||| || ||||| Sbjct 35211 GCCTCCACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq4618 Length=10119 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| ||||| |||| || || ||| || |||||||| ||||| || | | Sbjct 656 CCACCCCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAG 597 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || || |||||||| ||||||||||| | | |||||| |||| || Sbjct 596 AGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGG 537 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||| || || || || || ||| | || | |||||||| | | || || Sbjct 536 ATACCCTCTTTGTCTTGAATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACT 477 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || || || || || | |||||| ||||| |||||||| Sbjct 476 TCAAGAGTGATAGTTTTGCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| ||||| |||| || || ||| || || ||||| ||||| Sbjct 207 TTGCATCCCACCTCTCAATCTCAGTACCAAATGGAGTGTGGATTCTTTCTGGATATTGTA 148 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | |||| ||| | || || |||||||| ||||||||||| | | |||||| || Sbjct 147 GTCCGAGAGTGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTC 88 Query 44224 TGAAGGCACACCTTCCTTTTC 44244 || ||| | ||| || || || Sbjct 87 TGGAGGGATACCCTCTTTGTC 67 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359695747745103