Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 149 2e-30 seq2773 149 2e-30 seq2744 147 5e-30 seq4618 141 2e-28 SEQ37497 113 1e-19 seq3747 93.3 1e-13 >SEQ58356 Length=38410 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || ||||| ||||||||||||||||| ||| || Sbjct 35263 CAGATATTCGTGAAAACCCTTACGGGGAAAACCATCACCCTCGAGGTGGAGGCCTCCGAT 35204 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| ||||| || ||||| || || || ||||| |||||| Sbjct 35203 ACTATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAGGGTATTCCACCGGATCAGCAA 35144 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||||| |||||||| | || | |||| || || | Sbjct 35143 CGTTTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTATCCGACTACAATATT 35084 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 || || || || ||| |||||||||| ||||| Sbjct 35083 CAGAAGGAGTCTACATTGCATCTTGTGTTGAG 35052 >seq2773 Length=85211 Score = 149 bits (164), Expect = 2e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||||||||| || ||||| ||| | || || || ||||| Sbjct 66397 CAAATCTTTGTTAAAACTCTCACAGGTAAGACGATTACCTTAGAAGTAGAGCCATCAGAT 66456 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || || ||||||||||| |||||||||||||||||| Sbjct 66457 ACTATCGAAAACGTAAAGGCGAAAATCCAAGACAAAGAAGGCATCCCTCCGGACCAGCAA 66516 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || || || ||||||||| | || || | || || ||| | Sbjct 66517 CGGCTCATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACCCTGTCTGACTACAACATT 66576 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||| || || || || |||||| || Sbjct 66577 CAAAAAGAGTCTACTCTTCACCTTGTTCTG 66606 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || ||||| |||||||| || ||| | ||||| || Sbjct 66163 AAAATGC---AGATATTTGTGAAGACACTCACTGGAAAAACCATAACCTTGGAGGTTGAG 66219 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || || || || || || ||| || ||||||||||||||||| |||||||| Sbjct 66220 CCATCGGATACAATTGAAAATGTAAAAGCTAAAATTCAGGACAAAGAAGGTATCCCTCCC 66279 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || ||||||||||| || |||||||| |||||||| | || || | ||| Sbjct 66280 GATCAGCAGCGTCTTATCTTCGCAGGGAAACAGCTTGAAGATGGGCGTACACTGTCTGAT 66339 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| | ||||| ||||| || || || |||| Sbjct 66340 TACAACATTCAAAAGGAATCTACGCTTCA-CTTG 66372 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || ||||| || || || | || || ||| ||||| Sbjct 66853 CAAATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTTGAACCTTCAGAT 66912 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || |||||||| ||||| |||||||| ||||| || Sbjct 66913 ACAATTGAGAATGTTAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAACAG 66972 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || ||||| || || |||||||| | || || | || || ||| | Sbjct 66973 CGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTCTCTGACTACAACATT 67032 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 |||||||| || || || || |||||| Sbjct 67033 CAAAAAGAGTCCACTCTTCACCTTGTT 67059 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| || || || || || || || | || || ||| || ||| Sbjct 67081 CAAATTTTTGTGAAAACACTAACGGGCAAGACCATTACTTTGGAAGTTGAACCTTCGGAC 67140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || || ||||| || ||||| |||||||| ||||| || Sbjct 67141 ACAATTGAGAATGTCAAAGCCAAAATCCAGGATAAGGAAGGCATCCCTCCAGACCAACAG 67200 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || ||||| || || |||||||| | || || | || || || | Sbjct 67201 CGACTTATCTTTGCTGGAAAGCAACTGGAAGATGGGCGAACCCTGTCTGACTACAATATT 67260 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| || || || || ||||| Sbjct 67261 CAAAAAGAGTCGACTCTTCACCTTGT 67286 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || || || | || || ||| ||||| Sbjct 67309 CAGATCTTTGTCAAGACTCTTACTGGAAAGACCATTACTTTGGAAGTAGAACCTTCAGAT 67368 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| |||||| || || |||||||| ||||| |||||||| ||||| || Sbjct 67369 ACAATTGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGCATCCCTCCAGACCAACAG 67428 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || |||||||| || |||||||| | || || | || || ||| | Sbjct 67429 CGACTCATCTTTGCTGGAAAACAACTGGAAGATGGGCGAACCCTATCTGACTACAACATT 67488 Query 178104 CAAAAAGAATCAACACTGCA 178123 ||||||||||| || |||| Sbjct 67489 CAAAAAGAATCCACTTTGCA 67508 >seq2744 Length=156805 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || ||||| || ||||| ||||| ||| |||||| Sbjct 156573 CAGATTTTTGTAAAGACACTCACTGGCAAAACTATTACCCTAGAGGTAGAACCTTCAGAC 156632 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || || ||||| |||||||| || ||||| || |||||||| Sbjct 156633 ACTATTGAAAATGTAAAGGCTAAAATTCAAGACAAAGAGGGTATCCCGCCAGACCAGCAG 156692 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | |||||||| || || || ||||| |||||||| | || || | || || ||| || Sbjct 156693 AGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACACTCTCTGACTACAACATC 156752 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||||| ||| | || ||||| | ||| Sbjct 156753 CAAAAAGAATCCACACTCCATTTGGTACTGAGATTGAGA 156791 >seq4618 Length=10119 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || ||||| ||||| || || || || |||||| Sbjct 433 CAAATTTTCGTCAAGACCTTGACTGGCAAAACTATCACTCTTGAAGTTGAGCCATCAGAC 492 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || || ||||| |||||||| || ||||| || |||||||| Sbjct 493 ACCATCGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAGCAG 552 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||||| || ||||| |||||||| | || || | || || || || Sbjct 553 AGGCTCATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACACTCTCGGACTACAATATC 612 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||||||||| ||||| ||| | || ||||| Sbjct 613 CAAAAAGAATCCACACTCCATTTGGTACTGAGA 645 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || ||||| ||||| || || || || |||||| Sbjct 205 CAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCAGAC 264 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || ||||| |||||||| || ||||| || |||||||| Sbjct 265 ACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAGCAG 324 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || | || || || || Sbjct 325 AGGCTCATCTTTGCGGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAATATC 384 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| ||||| ||| | || ||||| | ||| Sbjct 385 CAAAAAGAATCTACACTCCATTTGGTACTGAGATTGAGA 423 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || ||||| ||||| || || || || ||||||||||| || || || || || Sbjct 1 GGCAAAACCATCACTCTTGAAGTTGAGCCATCAGACACCATTGAAAATGTTAAGGCTAAA 60 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 || || |||||||| || |||||||| |||||||| | || ||||| ||||| || ||| Sbjct 61 ATCCAAGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAG 120 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTT 178127 || |||||||| | || || | || || || |||| |||||||| ||||| ||| | Sbjct 121 CTTGAAGATGGCCGCACACTCTCGGACTACAATATCCAGAAAGAATCCACACTCCATTTG 180 Query 178128 GTTTTGAGACTCAGA 178142 || ||||| | ||| Sbjct 181 GTACTGAGATTGAGA 195 >SEQ37497 Length=345 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || || ||||| ||||| || || || || |||||| Sbjct 161 CAAATTTTCGTCAAGACCTTGACTGGCAAAACCATCACTCTTGAAGTTGAGCCATCAGAC 220 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || ||||| |||||||| || ||||| || |||||||| Sbjct 221 ACCATTGAAAATGTTAAGGCCAAAATTCAAGACAAAGAGGGTATCCCACCAGACCAGCAG 280 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || ||||| |||||||| |||||||| | || || | || || || || Sbjct 281 AGGCTCATTTTTGCCGGCAAACAGCTTGAAGATGGCCGCACACTCTCGGACTACAATATC 340 Query 178104 CAAAA 178108 ||||| Sbjct 341 CAAAA 345 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || || || |||||||| || ||||| || |||||||| | || ||||| ||||| || Sbjct 14 AAAATACAAGACAAAGAGGGTATCCCACCAGACCAGCAGAGGCTCATCTTTGCCGGCAAG 73 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | || || | || || || ||||||||||||| ||||| ||| Sbjct 74 CAGCTTGAAGATGGTCGTACACTCTCTGACTACAATATCCAAAAAGAATCCACACTCCAT 133 Query 178125 CTTGTTTTGAGACTCAGA 178142 | || ||||| | ||| Sbjct 134 TTGGTACTGAGATTGAGA 151 >seq3747 Length=111519 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || || || || || || ||||| || ||||| ||| ||| ||| Sbjct 105065 CAGATTTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCTGAC 105124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || ||||| || |||||| |||||||| || || || ||||||||||| || ||||| Sbjct 105125 ACAATCGAAAATGTCAAAGCTAAGATTCAAGATAAGGAGGGAATCCCTCCAGATCAGCA 105183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202695419771846