Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Calephelis_20virginiensis_20[genbank_20GCA_5F002245475.1_202017-08- 10] 67,159 sequences; 855,081,797 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value SEQ58356 102 8e-17 seq2773 93.3 4e-14 seq2744 87.8 2e-12 seq4618 84.2 2e-11 >SEQ58356 Length=38410 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||| ||||||| || |||||||||||| || |||||||| | ||||| | || Sbjct 35055 AACACAAGATGCAATGTAGACTCCTTCTGAATATTGTAGTCGGATAATGTGCGGCCATCT 35114 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||| || || || || |||| || || || |||| |||| | ||| || | | Sbjct 35115 TCCAGCTGTTTACCAGCAAAGATCAAACGTTGCTGATCCGGTGGAATACCCTCTTTAT-C 35173 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| ||||||||| || | | ||| ||| | ||||||||| | || || || Sbjct 35174 TTGAATTTTTGCTTTTACATTTTCAATAGTATCGGAGGCCTCCACCTCGAGGGTGATGGT 35233 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| ||||| || || || ||||| |||||||| Sbjct 35234 TTTCCCCGTAAGGGTTTTCACGAATATCTGCAT 35266 >seq2773 Length=85211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||| || |||||||| ||||| ||| Sbjct 67076 CCACCTCGCAGACGGAGAACAAGGTGAAGAGTGGACTCTTTTTGAATGTTGTAGTCAGAG 67017 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| ||| | || || || ||||| || || || || || ||||||||||| | || Sbjct 67016 AGGGTTCGCCCATCTTCCAGTTGCTTTCCAGCAAAGATAAGTCGCTGTTGGTCTGGAGGG 66957 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC 41788 | || ||||||||| || |||| |||| ||| Sbjct 66956 ATGCCTTCCTTGTCC-TGGATTTTGGCTTTAAC 66925 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || |||||||| || | |||| ||| || || |||||||| ||||| || Sbjct 67533 GCCTCCTCGGAGACGTAATACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 67474 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| ||| | || || || || || || || || || || ||||||||||| | || Sbjct 67473 TAGGGTTCGCCCATCTTCCAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGG 67414 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCT--CGACTCC 41812 | || ||||||||| || |||| |||| || || | ||| || | || Sbjct 67413 GATGCCTTCCTTGTCC-TGGATTTTGGCTTTGACATTCTCA-ATTGTATCTGAAGGTTCT 67356 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || || || || || || ||||| || || |||||||| Sbjct 67355 ACTTCCAAAGTAATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 67306 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||| ||||| |||| || ||||| ||||| |||||||| || || || Sbjct 66848 CCACCTCGTAAGCGTAATACCAAGTGAAGCGTAGATTCCTTTTGAATGTTGTAATCAGAC 66789 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || ||| | || || || || || || || || || || ||||||||||| | || Sbjct 66788 AGTGTACGCCCATCTTCTAGTTGTTTTCCAGCAAAGATGAGTCGCTGTTGGTCTGGAGGG 66729 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCT--CGACTCCA 41813 | || ||||||||| || |||| |||| ||| || | ||| || | || | Sbjct 66728 ATGCCTTCCTTGTCC-TGGATTTTGGCTTTAACATTCTCA-ATTGTATCTGAAGGTTCAA 66671 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || || || || || ||||| || || || ||||| ||||| Sbjct 66670 CTTCCAAAGTAATAGTCTTGCCTGTCAGTGTTTTCACAAAAATTTGCAT 66622 >seq2744 Length=156805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || ||||| ||||| ||||| || || | || || Sbjct 156778 ACCAAATGGAGTGTGGATTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGACCATCTTCA 156719 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG-CGGGA-ACGCTCTCCTTGTCCA 41771 |||||||| || || || || || | ||| ||||| | ||||| || |||| ||||| Sbjct 156718 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGCGGGATACCCTCT--TTGTCT- 156662 Query 41772 TGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| |||| || | || || |||||| | || ||||| | || || ||| Sbjct 156661 TGAATTTTAGCCTTTACATTTTCAATAGTGTCTGAAGGTTCTACCTCTAGGGTAATAGTT 156602 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || |||||||| |||||||||||||| Sbjct 156601 TTGCCAGTGAGTGTCTTTACAAAAATCTGCATGTT 156567 >seq4618 Length=10119 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || ||| || || || || || ||||| ||||| ||||| | || || Sbjct 638 ACCAAATGGAGTGTGGATTCTTTTTGGATATTGTAGTCCGAGAGTGTGCGGCCATCTTCA 579 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||||||||| || || || | ||| ||||| | || | | ||| |||| | || Sbjct 578 AGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATACCCTCTTTGT-CTTG 520 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| || | ||| | | ||||| | ||| || || | || || ||||| Sbjct 519 AATTTTGGCCTTAACATTTTCGATGGTGTCTGATGGCTCAACTTCAAGAGTGATAGTTTT 460 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| ||||| |||||||| ||||| Sbjct 459 GCCAGTCAAGGTCTTGACGAAAATTTGCAT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461915901570800