Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq147988 129 1e-24 seq236343 114 3e-20 seq62469 93.3 9e-14 seq1080 89.7 1e-12 >seq147988 Length=4520 Score = 129 bits (142), Expect = 1e-24 Identities = 237/345 (69%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||| ||||| || || || |||||||||| ||||| || ||||||| | |||| ||| Sbjct 2227 TCAGGCATCTACTTCAGAGTTGTATGGAAAGGTTCAGGAGGTTCCTCAGAAGGAAACGAC 2168 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGT-A 61206 || |||||||||||||| || ||||| || || || || || || |||||| | || | Sbjct 2167 GCCTTTTTATCCTCGTAGTCCCTATGGCGTGGCCAAGCTCTATGCCTACTGG-TCCGTGA 2109 Query 61207 AAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACGAGA 61266 || | ||| ||| | |||| ||||||| ||||| ||| || || || |||| Sbjct 2108 TTAACTTCCGGGAGGCCTATGATATGTTTGCCTGTAATGGGATCCTCTTTAACCATGAGA 2049 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT 61326 |||| ||||| | | ||||| || | || |||||| | ||||| || ||| Sbjct 2048 GTCCACGGAGAGGAGAGAACTTTGTCACGAGGAAGATTACGCGCTCTGTTGCCAAGATTC 1989 Query 61327 TTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGGAT 61386 || || | | ||| | | || |||||| | ||||| || | ||||||||| Sbjct 1988 AGTTGGGGCTCCTAGATTGCTTTGAACTTGGAAACTTGGACTCCAAGCGTGATTGGGGAC 1929 Query 61387 ATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAG 61431 |||| | || ||| | | | |||||| | |||||||| |||| Sbjct 1928 ATGCCAAGGACTATGTACAAGGAATGTGGCTCATGTTGCAGCAAG 1884 >seq236343 Length=1092 Score = 114 bits (126), Expect = 3e-20 Identities = 259/385 (67%), Gaps = 12/385 (3%) Strand=Plus/Plus Query 61084 TTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAA 61143 ||| ||||||| |||| || || || ||||| ||||| || || || |||| |||| Sbjct 55 TTTATCAAGCAGCAACCTCCGAGCTTTATGGGAAAGTGCAGACGATCCCACAAAATGAAA 114 Query 61144 GGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTT 61203 || || |||||||| || || || | ||||| ||||||||||| || |||||| Sbjct 115 ATACGCCTTTTTATCCACGCTCTCCTTACGCAGTTGCGAAACTATACGCGTATTGGATTA 174 Query 61204 GTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAATCACG 61263 |||||| || || || ||||| | |||| ||||| |||| || ||||||| Sbjct 175 CGGTAAATTATCGTGAATCCTATGGTTTATTTGCCTGTAATGGAATTTTATTTAATCACG 234 Query 61264 AGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTT----GCA 61319 || ||| | ||||| | |||||| || |||||| |||| |||| | ||| Sbjct 235 AGTCTCCTAGAAGAGGGGAAACGTTTGTAACGCGTAAAGTTAC--TCGCGGATTAGCGCA 292 Query 61320 AATATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGAT 61379 |||| |||| || || | || | || | || || || || | | || Sbjct 293 AATA--GCGCACGGAGTAGATGATTGTCTTTACTTGGGTAATTTAAGTGCTTTACGTGAC 350 Query 61380 TGGGGATATGCGGAAGATTA--TATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTC 61437 ||||| | ||| ||||||| || | || | ||||||||| | ||||||| | | Sbjct 351 TGGGGGCACGCGAAAGATTACGTAAAAATGCAA--TGGTTGATGCTACAACAAGCCATCC 408 Query 61438 CAGATGACTACGTTATTGCGACTGG 61462 |||| ||||||||||| || ||||| Sbjct 409 CAGAAGACTACGTTATAGCTACTGG 433 >seq62469 Length=843 Score = 93.3 bits (102), Expect = 9e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || |||||||| || || |||||||||||||| || ||||| | Sbjct 674 CAAGCTTCGACGTCTGAACTATACGGCCTTGTTCAAGAAATTCCCCAGCGAGAAACAAAA 733 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || |||||||| || ||||| |||| ||||||||| || || || || |||||| | Sbjct 734 CCATTTTATCCACGCAGCCCTTATGCTGTTGCAAAGCTTTATGCATATTGGATTACGGTA 793 Query 61209 AATTACCGCGA 61219 ||||||||||| Sbjct 794 AATTACCGCGA 804 >seq1080 Length=3206 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2887 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2828 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2827 CCCACGTTGGGC 2816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1053912280564080