Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq28030 244 1e-59 >seq28030 Length=5412 Score = 244 bits (270), Expect = 1e-59 Identities = 573/859 (67%), Gaps = 13/859 (2%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT- 15990 || || |||||||| || ||||| || | || |||||||||||||| |||||||| || Sbjct 1271 TTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTTCCATAAAGTCAAAGGGGTTT 1330 Query 15991 --AGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 | || || | || ||| | | | | || || || | || ||| || |||||| Sbjct 1331 TCATTAT-TGTAGAT--CTTGGGGCAGTCAAGCTCTACAAGGAGTCGATCCGCGACAAAT 1387 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 | || || || ||| | || ||||| ||||| | | ||| || |||||||| | | Sbjct 1388 TTGATGTACTGCACCATGGAATCACAATTCATTCCGAGCATTCGCACGGGAAGAGCCTCT 1447 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 || | || | || ||| |||| || ||| || ||| || ||| || || Sbjct 1448 GTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATTTCCGTGATCCGCTCCACA 1507 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 || || ||| || ||| | ||||| || || || ||||| || || |||||| Sbjct 1508 GAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCG 1567 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 || | || |||||||| || || || | ||| ||||| ||| || ||||| | | Sbjct 1568 TCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGC 1627 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||||| || | |||||| ||||| || ||||| || || || || | |||||||| || Sbjct 1628 CAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATG 1687 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | ||| || | | | |||| || | |||| || || |||| | || || Sbjct 1688 ATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGCCTTC 1747 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 | || ||| | | | || | ||| ||||| | | ||||||| |||| Sbjct 1748 TTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCC 1807 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | ||||| || ||||| ||||| ||||||||| ||||| ||||| || ||||| | | Sbjct 1808 TTGATATAGGTGTCAATGAGTAATGAGTACATTTCAGAGTGAATGTTTTCGATGGCGACC 1867 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 ||||| |||||||||||||| || || | | ||| || || || || || || | Sbjct 1868 TGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACG 1927 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA--ATATGTGCTTAATGA 16646 | ||||||||| ||||| |||||| |||||| ||||| || | | ||| | | |||| Sbjct 1928 ATGTTCTCATTAACGATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGAT--ATGA 1985 Query 16647 AATA---TTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCA 16703 |||| | ||||||| | | | ||||||| ||| ||| | ||||| Sbjct 1986 AATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCA 2045 Query 16704 CTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGT 16763 | ||||| |||||| ||||| || || || ||||| ||||| ||||| || || || Sbjct 2046 CCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGT 2105 Query 16764 ATTGTATGGGAAATACGAC 16782 |||| ||||||| ||||| Sbjct 2106 ATTGGATGGGAAGGACGAC 2124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509569370269120