Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq61270 120 2e-22 seq287714 82.4 5e-11 >seq61270 Length=8000 Score = 120 bits (132), Expect = 2e-22 Identities = 213/307 (69%), Gaps = 4/307 (1%) Strand=Plus/Minus Query 101642 GTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACA 101701 || |||||||| | || ||| |||||||| | || |||| || ||| | | Sbjct 7644 GTAGGAAACGGACGGGGCTCCCGCTTCAACTGCTCCTCCAGGGCATTAACGTGGTTATTA 7585 Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 |||| || ||||| || | | ||| ||||| || || ||| ||| || ||||| Sbjct 7584 TAGACATGGGCATCCCCCAGGGAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACATGG 7525 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 || |||||| |||| ||| | |||||| |||||||||||||| || || | |||||| Sbjct 7524 GCCATCATGATGGTTAGAAGGGCATAGCTGGCAATGTTAAATGGTACACCAAGACCCATA 7465 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTG-ACT 101880 ||||| || | ||||||| ||| || ||||||| || | ||||| || || || Sbjct 7464 TCAGCAGAGCGCTGATACATTTGGCAAGAAAGCTCCCCGTTCGCCACATAGAACTGTAC- 7406 Query 101881 TAATACA-TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACA 101939 || ||| || || || ||||| ||||| | ||| ||| | ||||||||||||| Sbjct 7405 -AAGACAGTGGCACGGAGGCAAGGCCATTAAATGAAGATCTCTCGCGTTCCAAGCACACA 7347 Query 101940 TTAACAT 101946 | | ||| Sbjct 7346 TCACCAT 7340 >seq287714 Length=1605 Score = 82.4 bits (90), Expect = 5e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 |||| ||||| ||| || |||||||| || | ||||| | ||| || || || Sbjct 1342 TCAAAGTGATTATGATAAATATGAGCATCGCCAAACGTATGAACAAAATCGCCTACTTCT 1283 Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAA-AAGAGAATAGCTAGCAATGTTAAATGG 101805 | || | || || || | ||| || | ||| ||| | ||| ||||| ||||| || Sbjct 1282 AAATCACAAACTTGCGCTAACAT-CATGGTAAGAAGCGCATAAGAGGCAATATTAAACGG 1224 Query 101806 CACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACA 101865 ||| ||||| ||||| || || | ||| || |||||||| || | ||||||||| Sbjct 1223 CACACCTAAGAAGATATCCGCAGAACGTTGGTAAAGTTGACAAGACAACTTTCCATCCGC 1164 Query 101866 GACATAAAATTGACTTAATACATGACAAGGCGGCAACACCAT 101907 |||||||| ||| | ||||||||||||||| |||| Sbjct 1163 CACATAAAACTGAAACATCGTATGACAAGGCGGCAAGGCCAT 1122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980496194616