Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq28030 208 9e-49 seq244135 89.7 6e-13 >seq28030 Length=5412 Score = 208 bits (230), Expect = 9e-49 Identities = 405/595 (68%), Gaps = 10/595 (2%) Strand=Plus/Plus Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTC 24178 |||| | ||||| | || || || || ||| || || ||||| | | ||| | ||| Sbjct 1525 ATGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTC 1584 Query 24179 GTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA 24238 ||| || |||||||| || ||||| || |||||||| || ||||| || ||||| ||||| Sbjct 1585 GTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAA 1644 Query 24239 TGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA--- 24295 || || || |||||||| ||||| || |||||||| || || | || |||||| | Sbjct 1645 GGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGA 1704 Query 24296 ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 24355 | | | | | || ||||||||||||||||| | |||||||||| | | ||| | Sbjct 1705 AGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAA 1764 Query 24356 TGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT 24415 | || | || |||||||| ||||| | |||| || | ||| || ||||| Sbjct 1765 GTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAAT 1824 Query 24416 CA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 | || || || |||||| || ||||||||||| ||||| | ||||| || ||||| Sbjct 1825 GAGTAATGAGTA--CATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAG 1882 Query 24474 CATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACT 24533 |||| || || |||| || || || || || || | | || ||||| || Sbjct 1883 CATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACG 1942 Query 24534 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCT 24590 ||||||||| || || ||||| || | ||||| ||| ||||| | |||||| Sbjct 1943 ATTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCA 2002 Query 24591 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 24650 | | | |||||| | |||| || | |||||| ||||| || ||||| Sbjct 2003 TTCAGACGCTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAG 2062 Query 24651 AATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAA 24705 || || | || ||||| ||||| ||||||||||| | ||||| || |||| Sbjct 2063 AAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAA 2117 >seq244135 Length=507 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 53155 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 53214 ||||||||| || | ||| | || || ||||||||| ||||||||| || | || || Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 53215 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 ||||||||| ||||| || | || || || || ||||||||||| || ||||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591579630583680