Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq11950 86.0 5e-12 >seq11950 Length=2906 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | ||| ||||||||| | || |||||||| || || ||||| ||| Sbjct 298 GATAAAGAAGGAATCCCCCCAGATCAACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAA 357 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | ||| | |||||||||| ||||| |||||||| || ||||| Sbjct 358 GATGGCCGTACTCTCTCCGATTACAACATTCAAAAGGAATCCACCCTTCA 407 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| ||| || || | ||||||||||| || |||||||||||| Sbjct 70 GACAAGGAAGGAATCCCCCCAGACCAGCAGCGTCTTATCTTTGCTGGAAAACAACTGGAA 129 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||| | |||| |||||||||||||||||||| || ||||| Sbjct 130 GATGGTCGTACTCTTTCCGACTACAATATTCAGAAGGAATCGACCCTTCA 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426829324907480